BAC Information

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BAC

Clone NameMSMg01-392H10
Chromosome8 (Build37)
Map Location 13,923,597 - 13,923,840
singlet/doubletsinglet
Overlap geneFbxo25
Upstream geneMcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536
Downstream geneLOC100041103, 2610019F03Rik, EG546036, Erich1, Dlgap2, LOC100041140, C030037F17Rik, Cln8, Arhgef10
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392H10.T7 (MSMg01no392_h10.b1)MSMg01-392H10.TJ (MSMg01no392_h10.g1)
ACCAG493992AG493993
length771836
length of high quality
(start - end)
244 (71 - 314)242 (73 - 314)
definitionCHROMAT_FILE: MSMg01no392_h10.b1 PHD_FILE: MSMg01no392_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:59 2005CHROMAT_FILE: MSMg01no392_h10.g1 PHD_FILE: MSMg01no392_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:36:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACACACCACCGC
GGAANTCCCTGTTCACAATTGCTCCCTGAGTGTGTACAGCACCAGATCCC
GAGGCCTCCTGTCCTCCCACCCCCGCCCCCTTGTCCCCAGCAACAGAAAG
CAGAGTGGAGTTTCACTAGTACTCACTGTAGCAGCAATGTGAAAAACTGC
TGTGCCTCGTGTCTCAGTAACACACAATTGGCTTACGTTTAGTATTGCTG
TCTTTGCTCTGTTCTCATTTATATCTGACATGGGTTTTAGAACTAATACA
AATACCTTTCACTACAGTTTTTTTATGCCCTAGCACGTGTCAGATGTTGA
CTGACTTTCCTTGGCTGGCTGACGTCCCTGCCTGTCTGATGTCTTGTAGA
GGCATGGCTACTGCACCCCGCCAGAAGCCTTCAACCGGCTAGACTTCTCA
AGTGCCATTCAGGACATCAGGAGGTTCACTTACGTGGTCCAAGTAACCGG
CTCTCGCGTAACCCCCTCCGATGACCCCCCTTGCCTCCCTTGCCCCTTAC
CCGTACGATTCCACTCTCTCTCTCCACTGCCCCCCTCCTCCAATGGTACC
CCCCCCCTCCCCACCTTATTTCCCCATCCCCCCCCCCCTTACTTCCCCAC
CCTCTTTTTTTTTTTCTCCCCCTTTCTTCCCCCCTGTCTCCTCCATCCCA
CTTCCTTTCCCCTACTTCCCCCCCCGCTCTCCCCCCCCCTTTTCTCTGTC
CTCCCCCCCCCATCCCTCCCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTCACGAATTCACAGTAATCCTTCTGCCTAAATCTCCCAA
GTGCTGAGGTGGTGAGTGAGCTTTGTATAGAAATAGGATATATACATCGC
TCCAAGCCAATGTTCATTCAGCAAGCTGGTGTTTGTGGAGCATCCAGTGC
TGTGTGAGCTGCCTCAGGTTAGGGTCCTGCATTAAATCCCTTCCTTGTAT
TGATTCATTGATGTAATCCAAGGCAGAGCCCTATTGTGGACAATGGCGCA
AGGTTACTCGACTGTTTTTTCTCCTTTTCATCACACAGACAAGAAAGCTT
GCAAGGCCTATTTCCCCTGCCCTCTCCTCTGATTCGCACCTCAATGTTTA
GTCTCTTTCGCCCCCCCCCCTTCCCCCTTTTGTTTCTTTCCCCACTCTCT
CTTGCCTCTCCCCCTCCCCCTTTCTCCTATTCCCCTCCTTTTCTCTTTTC
CCCCCTTTTCTTCACCTTGCCTCTTTTTTTCCCATTTTTCTCCTTGCCTC
CCTTTTTTGCTTTCCCTCCTCCCCTCTCTTTCTTCCCGCCCTTCCCTTTC
CCCCCCTATTTTCGTACTTTCCTTCCATTACCTCCTCTCCTCCCCCTTTT
CCTCTCTTCCCCTTTTCTCTTTTCTCTCTTTTCGTTCCCCCCTTCTTTTC
TTTACTCCCTCTTCTTCTCCCCCCCTTTCCTTCTCCTTTTTTCCCTCCTT
CCTTTCCCCCCCCCTACTTCTTTCTATCCCCTTTCTTTACTCCTGCTTCT
TTCCTTTTCTTACTTCTTCTCCTTCATCTCCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_h10.b1 MSMg01no392_h10.b1 CHROMAT_FILE:
MSMg01no392_h10.b1 PHD_FILE: MSMg01no392_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:36:59 2005
         (244 letters)



>mm_chr8_13923397_13924040
          Length = 644

 Score =  426 bits (220), Expect = e-124
 Identities = 238/244 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gctccctgagtgtgtacagcaccagatcccgaggcctcctgtcctcccacccccgccccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gctccctgagtgtgtacagcaccagatcccgaggcctcctgtcctcccaccccctccccc 260

                                                                       
Query: 61  ttgtccccagcaacagaaagcagagtggagtttcactagtactcactgtagcagcaatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 ttgtccccagcaacagaaagcagagtggagtttcactagtactcactctagcagcaatgt 320

                                                                       
Query: 121 gaaaaactgctgtgcctcgtgtctcagtaacacacaattggcttacgtttagtattgctg 180
           |||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 gaaaaactgccgtgcctcctgtctcagtaacacacagttggcttacgtttagtattgctg 380

                                                                       
Query: 181 tctttgctctgttctcatttatatctgacatgggttttagaactaatacaaatacctttc 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctttgctctgttctcatttatgtctgacatgggttttagaactaatacaaatacctttc 440

               
Query: 241 acta 244
           ||||
Sbjct: 441 acta 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)