BAC Information

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BAC

Clone NameMSMg01-392K21
Chromosome8 (Build37)
Map Location 39,753,979 - 39,861,952
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392K21.T7 (MSMg01no392_k21.b1)MSMg01-392K21.TJ (MSMg01no392_k21.g1)
ACCAG494158AG494159
length780786
length of high quality
(start - end)
450 (48 - 497)165 (73 - 237)
definitionCHROMAT_FILE: MSMg01no392_k21.b1 PHD_FILE: MSMg01no392_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:17 2005CHROMAT_FILE: MSMg01no392_k21.g1 PHD_FILE: MSMg01no392_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,861,507 - 39,861,952)(39,753,979 - 39,754,142)
sequence
NNAATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTAAGATTATACATTTTTCTGAGCCAGTAGTCACTTTTGTTTT
GTCAGCAGCACATGATGCCCAGATCAATATTTTCTGGGAGTCTGGCATGG
ATATGTTGTCACTGTTTCAGCACTAGTGGGCAATCTGAGCCCAGGTTTGT
CTCAAATATACTGTTGGTTCAGAAAGAAATAGGAGAGTAGCTAGAAACAG
TAGTTAGATCCCATATGCCTCTCCCTGGGGCCAGGGTTGGCCCAGAAGCC
TCATCCACAGTTAGTGACTGATGGTTTGAAACTGCAGGATTCTGGCTGTT
GCTGGGCAGAGTTACCAGGTTCTTATGTAATACCACTGGCCAACAGTGAG
GACAAAGTGTCACATCCTGAGCTCACCGAGAGGGCAAGTATGGCCAAGGC
CCACACCAAGGCTAGAAATGATAGGCCCAAATTTTCCCAGGTGAGACGCA
AAGGGATGGCAAAACCTTCCGTGCCTCTGAGAGTGAATGGACTGTTGAGT
GTGTGCACGAAAAGCCCACAAGTTGCTCTCTATTTCCATATGTTTGCACC
CTCGAGACTGCTCCCCTACCGAGATTCCTCCTATCACGATCAATTAAACC
CCCCCCCTTGGGGGTTGGAAAAAAAAATTTCCGCCCCTCTTTTATCCTGC
GGGGGAAACTGGGCCCCCCCCGCCCCCTTGTTTAAAAAACCCCCCCCCTC
TATCCCCTGGAATAAACCAAAACGCGGCGN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATGGCAGTTAAGGATGAAAACAAATTA
CTTAAGCAAAATCTTATTTTACCTATAAGTTACCTCCAACTGTAGAAATG
TGATGTCAAACCCAATACTGTACATTTGAGCGTAAAGATTTTAGACAGAA
ATCCCTCATAATTCTTCTAAGTAGGTTTTTAATAAGNNTCACATGGGNNA
AGTATTNTGTTTTGACAGGTAATTTTCTATTCACATTTAAAATATACTCC
ATTTTCACCTTTTTCCTTTCCACACGGTGTGAAAATGAGTCCTAAGATGA
AAGTTCCCCCCAAAAATTTTCCCCCTTGGTCCAAACTGGGGAAGGGGTTA
CCTTTTTTTAAATTATAAAAACTCCCCCCAACTTTTACGCCTTTAACGTC
GCCCCAGGACCTATGGCTCCTGGGGACCACTCCATAATATTCTCCCCCCA
CCCCCACAATTTTAAACNNGGGGNNNNNNNNAATTAATAAGCCNNNNNAA
GGTGAAAAGTGGGCCNTTGGNNNTCCNNNNCCTCCGTGTGCTCTCTCCGC
CNTTCCTTCCTTCCTCCAACTNTNCCCGACGGGGGGGGGTGTTTTNCCCC
TTCCCTTCTCCATCCGTCTCGTCTCCCGGGCTCCNCCTCCTCTCCCCCCC
CCCTNACTTCTTTATTCTTCTGCTGNNTTCCATTTTNTCTTCCCATCCAT
ACACCCATTTCTCCCTCCCCTTTTTACCGCTTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_k21.b1 MSMg01no392_k21.b1 CHROMAT_FILE:
MSMg01no392_k21.b1 PHD_FILE: MSMg01no392_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:17 2005
         (450 letters)



>mm_chr8_39861303_39862152
          Length = 850

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaagattatacatttttctgagccagtagtcacttttgttttgtcagcagcac 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattcctaagaagatacatttttctgagccagtagtcacttttgttttgtcagcagcac 591

                                                                       
Query: 65  atgatgcccagatcaatattttctgggagtctggcatggatatgttgtcactgtttcagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 atgatgcccagatcaatattttctgggagtctggcatggatatgttgtcactgtttcagc 531

                                                                       
Query: 125 actagtgggcaatctgagcccaggtttgtctcaaatatactgttggttcagaaagaaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 actagtgggcaatctgagcccaggtttgtctcaaatatactgttggttcagaaagaaata 471

                                                                       
Query: 185 ggagagtagctagaaacagtagttagatcccatatgcctctccctggggccagggttggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggagagtagctagaaacagtagttagatcccatatgcctctccctggggccagggttggc 411

                                                                       
Query: 245 ccagaagcctcatccacagttagtgactgatggtttgaaactgcaggattctggctgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccagaagcctcatccacagttagtgactgatggtttgaaactgcaggattctggctgttg 351

                                                                       
Query: 305 ctgggcagagttaccaggttcttatgtaataccactggccaacagtgaggacaaagtgtc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctgggcagagttaccaggttcttatgtaataccactggccaacagtgaggacaaagtgtc 291

                                                                       
Query: 365 acatcctgagctcaccgagagggcaagtatggccaaggcccacaccaaggctagaaatga 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 acatcctgagctcaccgagagggcaagtatggccaaggcccacaccaaggctagaaatga 231

                                     
Query: 425 taggcccaaattttcccaggtgagac 450
           ||||||||||||||||||||||||||
Sbjct: 230 taggcccaaattttcccaggtgagac 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no392_k21.g1 MSMg01no392_k21.g1 CHROMAT_FILE:
MSMg01no392_k21.g1 PHD_FILE: MSMg01no392_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:17 2005
         (165 letters)



>mm_chr8_39753779_39754343
          Length = 565

 Score =  317 bits (164), Expect = 2e-91
 Identities = 164/164 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggcagttaaggatgaaaacaaattacttaagcaaaatcttattttacctataagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatggcagttaaggatgaaaacaaattacttaagcaaaatcttattttacctataagtta 260

                                                                       
Query: 61  cctccaactgtagaaatgtgatgtcaaacccaatactgtacatttgagcgtaaagatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctccaactgtagaaatgtgatgtcaaacccaatactgtacatttgagcgtaaagatttt 320

                                                       
Query: 121 agacagaaatccctcataattcttctaagtaggtttttaataag 164
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacagaaatccctcataattcttctaagtaggtttttaataag 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)