BAC Information

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BAC

Clone NameMSMg01-392M15
Chromosome8 (Build37)
Map Location 19,977,234 - 19,977,719
singlet/doubletsinglet
Overlap geneEG665822
Upstream geneDefb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452, Defb6, EG574081, Defb5, Defb3, Defb54-ps, LOC100040504, LOC100040514, Defb8, LOC100040528, LOC100041511, Defb7, LOC670326, LOC100040561, LOC624198, EG665730, 4930467E23Rik, LOC100041567, LOC547150, LOC100040599
Downstream gene6820431F20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392M15.T7 (MSMg01no392_m15.b1)MSMg01-392M15.TJ (MSMg01no392_m15.g1)
ACCAG494241AG494242
length764774
length of high quality
(start - end)
488 (74 - 561)244 (72 - 315)
definitionCHROMAT_FILE: MSMg01no392_m15.b1 PHD_FILE: MSMg01no392_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:26 2005CHROMAT_FILE: MSMg01no392_m15.g1 PHD_FILE: MSMg01no392_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:26 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCCAGTTTTTCAGTTGTAAAGAAAATGACTGATAAAGTGTCAT
TCATAGTATTAGAAGAACTATCTTGTTGCTGCTTCATAACTGTAAATCTG
CTACTGCTATAAATCATAATGTAATATCTGATATGCAGGATAGCAGACCC
CAAGAGGATCACTACCCACAGGTTAAGAATCTAGGATTTTCAAGTGTCCA
CTAGCTGACAGCAATGCCCACCAAATGACTGTCTCAGCTACAAAGAAATG
GATACACGCCCGGAGAATGTTTCTGGACAAAGACCCCTATCATAGCTAGC
TTCAGTTGTCAACTTGGCACAAGCTTGGAGTCCCCTGAAAGGGGGAACCT
TAACTAAAGAACTGCCCCTATCAGATCGGCCAGTTGTCATGTCTGTGGAA
GAAACATTTCTTAATTTCTAATTGGTGCGAGAGGGCTCAGACCACTGTAG
GCAGTGCCAACCTTGGGCACATACTCCTGGGCTGTATAAGACAGCTGTCG
GAGTGAGCCCCATAGAGCAAGCCAGTAAACATTCCTCCATGGTCCTTGTT
TCCATTCCTGCCCCCGTGTTTCCAGCCTTGACCTCTTGCCCAAGCTTCCT
TTGATGGTAGACTTTGACCCCCACCCCAATTAATCCTTCCCCCCCCCAAA
CTGNTTTTTTTGAGGAGCGGTTTTACCCCCGGACCCAAGGAGCCCACCTT
CCCCCTCCACCCCC
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGTACCCCATTTTTAAT
AGGGTTATTTGGTTCTCCAGAGTCTTAACTTCTTGAGTTCTTTGTGTATA
TTGGATATTAGCCCTCTATCCGATGTAGGATTGGTAAATATCTTTTACCA
ATCAGTTGGTTGCCATTTTGTCCTATTGACAGTGTCCTTTGCCTTTCTAT
AAGCTTTGTAATTTTGAGGTCCCATGTGCCAATTCTTGATCTTAGAGCAA
AAGCTAATGGTGTTTNNGTCATTATAATTTCCCCTGTGCCCATGTGCTCC
AGGCTCTTTCCCACCTTCTTTTCTATTAGCCTCAGTGTATCTGGTTTTAT
GTGGAGGCCTCCCCCCCATGTGGACTTTACCTTTATTAAAGGACACCCGA
CTGGATCCCTTCGCATTCTTCTGCTCGCTACTCTCCCGTTGAACCATCTC
CCCCTGTTGAAAACGTTCCCTTCTTCCCCCCGCATGCCTCTCAGCTCCTT
TTTCTCCTACCCTCCTTACCCTCCGCCCGCCTCCCTTCTCCTCCGTGTTC
TTTCCTCCGCCTTCCCCCCTTCCCCCTGCTCTTCCTCTCCCTCATCTCCC
CCCTCCTTTCTCTTCTTCTTTCTCCCGGCTCCCGTCCTTTTCCTCTCCCC
CTTGTTTCTCCTCTCCCCCTACCTTCCTCCCCTCTTCTTTCCCTCCCACT
CCCCCTCCCCTCCCTTTTCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_m15.b1 MSMg01no392_m15.b1 CHROMAT_FILE:
MSMg01no392_m15.b1 PHD_FILE: MSMg01no392_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:26 2005
         (488 letters)



>mm_chr8_19977034_19977921
          Length = 888

 Score =  870 bits (450), Expect = 0.0
 Identities = 477/486 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaagaaaatgactgataaagtgtcattcatagtattagaagaactatcttgttgctgct 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 taaagaaaatgactgataaagtgtcattcatagtattagaagtactatcttgttgctgct 260

                                                                       
Query: 61  tcataactgtaaatctgctactgctataaatcataatgtaatatctgatatgcaggatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcataactgtaaatctgctactgctataaatcataatgtaatatctgatatgcaggatag 320

                                                                       
Query: 121 cagaccccaagaggatcactacccacaggttaagaatctaggattttcaagtgtccacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaccccaagaggatcactacccacaggttaagaatctaggattttcaagtgtccacta 380

                                                                       
Query: 181 gctgacagcaatgcccaccaaatgactgtctcagctacaaagaaatggatacacgcccgg 240
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 381 gctgacagcaatgcccaccaaatgactgcctcagctacagagaaatggatacacgcccgg 440

                                                                       
Query: 241 agaatgtttctggacaaagacccctatcatagctagcttcagttgtcaacttggcacaag 300
           |||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagggaactggacaaagacccctatcatagctagcttcagttgtcaacttggcacaag 500

                                                                       
Query: 301 cttggagtcccctgaaagggggaaccttaactaaagaactgcccctatcagatcggccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttggagtcccctgaaagggggaaccttaactaaagaactgcccctatcagatcggccag 560

                                                                       
Query: 361 ttgtcatgtctgtggaagaaacatttcttaatttctaattggtgcgagagggctcagacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtcatgtctgtggaagaaacatttcttaatttctaattggtgcgagagggctcagacc 620

                                                                       
Query: 421 actgtaggcagtgccaaccttgggcacatactcctgggctgtataagacagctgtcggag 480
           ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 621 actgtaggcagtgccaaccttgggcacattctcctgggctgtataagaaagctgtcggag 680

                 
Query: 481 tgagcc 486
           ||||||
Sbjct: 681 tgagcc 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)