BAC Information

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BAC

Clone NameMSMg01-392M18
Chromosome8 (Build37)
Map Location 114,094,861 - 114,095,117
singlet/doubletsinglet
Overlap geneZnrf1
Upstream geneHydin, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59
Downstream geneLdhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040, Cntnap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392M18.T7 (MSMg01no392_m18.b1)MSMg01-392M18.TJ (MSMg01no392_m18.g1)
ACCAG494247AG494248
length814859
length of high quality
(start - end)
259 (107 - 365)---
definitionCHROMAT_FILE: MSMg01no392_m18.b1 PHD_FILE: MSMg01no392_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:27 2005CHROMAT_FILE: MSMg01no392_m18.g1 PHD_FILE: MSMg01no392_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTTTGTACCACCAGGCTGGCCTCGAACTCAGAAATCCACCTG
CCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTACACCACCACACCCGGC
TTTCAAAGGGGTTTTAGGACTTGAATTTATTCTTCTCTGTGAGCTTTCAG
AGGTAACTATAGTTGATATCTTTCTCATCATTTAGAAAGCCATAGAATCT
TGACTCTCAAATTATTATTAACTCTGATTACAGAGGCATTACAAATTATT
TTTTAATGGCTGGAGATTGGTGATGGGATGGAATGGTGGCAAGTAGTGAG
GAGAGTGAGACCGTAAGGCGTAGGTCAGAATATCTTTCTCTGCTTACTCT
TTAGTTCTTTTTTTTCCCCCCCACGATTTATTTATTCATTATATGTAAGT
ACTCCCCAGCTGTCTTCTGACCCTCCCTAAGACACCCCGCCCCCTTTCCA
GAAGCCTGCGCCCCACCCTTGCGTCTCCCCCCCTCTTAACTTCTCTTCCT
CCTTTATACCCCTCCTCCCCCTCTCTTCCCCTCCCCCTTTCCCTCCCATT
CCCCCCCCCTCCTCCCTTCTCCCCCCCCCCTTCTCTTTTTCTTTCCACCG
CCCCCCTATGCCCTTCCTCTCCTTTTTCTTCCCTCCCCTATCCCCCCCCC
CCTCCTGTCCCTCCCCTCTGCTCCCCTTCTCCCCCCTCACCCCCTTTTTT
TTTCCTCGCCCTTCGCCTCCTCTCTCTCTTCTAATTGGACCCCCTCCGTT
CCTCCGCGCTTCCN
CGCTCACATCGTTGGTACTGTGATACAACGCTATCCATGGCCTTTTTATA
AATAAGAGGCGAGGATCATCAGCGTGTCTCCCTGCTAACTTCGGCGTCGA
CGTCCCTGTGCTATAGCAACGTAGATGAGGCGCCGTAGTCATCGGGTGAG
GCAGTATGCTAGCATAACACGCACCGATAATGATAAAGGAAAAGACGAAC
ATATACGTCTATTAATTACCCGCCGACATACGATCACCGCACCGCCGATC
TATTACTACGCGTATGTTATAACGACGACCAACATGATATCCCCCCATCG
CGCCGCCCATCCATTACATTACAATGTGCCATCCCTCTCTCCCTATACTT
TCTCGTGGATCACTTAATGCTAGCTTGAACGTCTATTGCACTTTCTCATT
TTTATCATAATCTGCTTTATTTGCTTTTATGTATTCTCTACGCTTTCTAC
CCGCGCGTAATCTACTTTCCTACGGGACTCCCTCGTTTAATTCCCTACCA
GCGAGTTGGGAATATAAACCACGGAAAAGCCCAAACAAGACAACCAGTAG
CCGCTTTGCCGATATCAGAAANACCCAACATCGCNNNCNNCCCGGCCAAT
ATCCCCCTCCTCTGACTGTTGGNTATTAGACCTAAGANAACGGNCCCGGN
NCCGTTGNCCCAATNNCGATTNNNNACCCTNATNGNCANNGNANTTNNCA
GNTCTGATCCTGNNNNNTNCCNTNAAATNGNACCTNCNNAATGCAANNNC
GATCCTCCAGCACTCTCCGTCTACCGCTAGGGGCTCCCCCGTCCCCCTCC
CCTCANCTAGCNAATCNCACAGCCCTCTTCGCCCTTATTTATAGCTAATT
GTTGCCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_m18.b1 MSMg01no392_m18.b1 CHROMAT_FILE:
MSMg01no392_m18.b1 PHD_FILE: MSMg01no392_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:27 2005
         (259 letters)



>mm_chr8_114094661_114095319
          Length = 659

 Score =  482 bits (249), Expect = e-140
 Identities = 255/257 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctcccgagtgctgggattaaaggcgtacaccaccacacccggctttcaaaggggtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctcccgagtgctgggattaaaggcgtacaccaccacacccggctttcaaaggggtttta 260

                                                                       
Query: 61  ggacttgaatttattcttctctgtgagctttcagaggtaactatagttgatatctttctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggacttgaatttattcttctctgtgagctttcagaggtaactatagttgatatctttctc 320

                                                                       
Query: 121 atcatttagaaagccatagaatcttgactctcaaattattattaactctgattacagagg 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attatttagaaagccatagaatcttgactctcaaattattattaactctgattacagagg 380

                                                                       
Query: 181 cattacaaattattttttaatggctggagattggtgatgggatggaatggtggcaagtag 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 cattacaaattattttttaatggctggagattggtgaagggatggaatggtggcaagtag 440

                            
Query: 241 tgaggagagtgagaccg 257
           |||||||||||||||||
Sbjct: 441 tgaggagagtgagaccg 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)