BAC Information

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BAC

Clone NameMSMg01-392N10
Chromosome8 (Build37)
Map Location 102,282,622 - 102,511,450
singlet/doubletdoublet
Overlap genenone
Upstream geneCdh8, A330008L17Rik, LOC667531
Downstream geneLOC100042069, LOC436054, LOC100042078, LOC100042086, LOC100042092, LOC384895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392N10.T7 (MSMg01no392_n10.b1)MSMg01-392N10.TJ (MSMg01no392_n10.g1)
ACCAG494279AG494280
length789780
length of high quality
(start - end)
340 (78 - 417)236 (76 - 311)
definitionCHROMAT_FILE: MSMg01no392_n10.b1 PHD_FILE: MSMg01no392_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:30 2005CHROMAT_FILE: MSMg01no392_n10.g1 PHD_FILE: MSMg01no392_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,282,622 - 102,282,961)(102,511,215 - 102,511,450)
sequence
NGGCCTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAACAGGATC
CGCGGAATTCCCCAATTCCTGAATTACATATGAAATTGATTGGAAGTAAA
TGTAACAAACATACAGTACTAAGCAATAAATGGTGACTTGGGACTTAGGG
TACATGATTAAATTAAAGGTATCTTCTAGAAATTATGTAAAAATTGATTC
TCCAAAATAGACACCCCATTAGATTTTAAAAAATCATAAATTGCTTTGTC
TTTCTTTGGAAAATGAGAAGATACTTTGATGAATACATGGCTGAAGTGGA
AACTTCTGATTTCTTTGGTATTTTATTTATGTCAAATAATGTTTGGCTAG
GGTACACAGGTGAAAGGACATTTTGCTAAAGCAAACAGGTGAAGGAATAT
TTCACTGAAGCAGACACCCCCCCAAACGATGTTTTCCTATACCCAACACA
TGAAAAACCACCAGATGTTTAGAAGAAATATAAATATGACTCCACAGACA
GTGGGAAATCAAGCATTGGTTTACCTTGCTCTGCCTCACTATCCTTGCTG
AGTTGTGCTTATGGCGACCTCTTATAGATAACCCCCTCCAATACCTTCTT
CATGGAAATTCCTGAGCCTTCTTTGCCCCTTCTCTCGCCCCCAGGTTGTT
CCGCTTCACACCCTTTTTCTTTCGCTCCCCCACAACCCCCCCGGCGCCTG
GCCGCCTCCTTCGCCCGTCGCCCGATCACCCTCCCCTCCTTCTCCCTCCC
CTCACCTCTCTGTTCCCTTTACCCCTCCTTCCCTTTGCG
TCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACATCACTCAAAAATGTCTGAGAGGAGACT
GTTTTTTGGGGTTTTATTTCCACGATTCCCAATAATGCTTTGAACTTTAA
CCAAAACTTTTCCAACGTAAAGAATAAATTATGAAAAAGGTTATAAATCT
CATTAAAATCTAATATTCAGCAAAGCTGCCTGGTGTGTACACTATGGAAA
ATTGTTTGTTACTGTAACTGGAGCCCTATGTATAATATTGGAAGTTAATT
ACAGAGGGCAGCCTTTTTTTTTCATTATTGACAGCTTATACAGGCTCAGA
CTTCATGATTTCTTTTTAATGTAATTGCTCTTAAGAGGTTACTTTCAACA
CCCATTCACTTCTTCCCCCCCCCAACACTAATCACTTTCCTGTTCACATC
CCACTTTACTTGTCTCTTGTTCTCATTACCCCTTTTTGACCTTTCTCGTC
TTTTTCCATTTTTTATGCCCTCCGTTTTCCACACCCTCCCCCCGTGTTCT
TCCCCCCTCCCTTTCATCCCCTCTTTTATCTCTTTTCCATTCCCCTCTTC
CTCCCAATTCCTGTTTTCCTTTTTATTTTCGTCTTTTCTCCCCCCCCCTT
TCTTATCCCCTCTTCTTCCCCCCCCCTTTATCTCCTTTTTCCCTCCTTCC
TTTCGCCGGCTCTTTCTCTCTTTTACCATTTTCCTCCTGCCTCTTCTTCC
TATTCCTCCACCATCCCTCCCTTCCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_n10.b1 MSMg01no392_n10.b1 CHROMAT_FILE:
MSMg01no392_n10.b1 PHD_FILE: MSMg01no392_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:30 2005
         (340 letters)



>mm_chr8_102282422_102283161
          Length = 740

 Score =  588 bits (304), Expect = e-172
 Identities = 331/340 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatgaaattgattggaagtaaatgtaacaaacatacagtactaagcaataaatggtgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatgaaattgattggaagtaaatgtaacaaacatacagtactaagcaataaatggtgac 260

                                                                       
Query: 61  ttgggacttagggtacatgattaaattaaaggtatcttctagaaattatgtaaaaattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgggacttagggtacatgattaaattaaaggtatcttctagaaattatgtaaaaattga 320

                                                                       
Query: 121 ttctccaaaatagacaccccattagattttaaaaaatcataaattgctttgtctttcttt 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttctccaaaatagacaccccattagatttttaaaaatcataaattgctttgtctttcttt 380

                                                                       
Query: 181 ggaaaatgagaagatactttgatgaatacatggctgaagtggaaacttctgatttctttg 240
           |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 381 ggaaaatgagaagatattttgatgaatacatggctgaagtagaaacttgtgatttctttg 440

                                                                       
Query: 241 gtattttatttatgtcaaataatgtttggctagggtacacaggtgaaaggacattttgct 300
           | |  | | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaagtcagttatgtcaaataatgtttggctagggtacacaggtgaaaggacattttgct 500

                                                   
Query: 301 aaagcaaacaggtgaaggaatatttcactgaagcagacac 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagcaaacaggtgaaggaatatttcactgaagcagacac 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no392_n10.g1 MSMg01no392_n10.g1 CHROMAT_FILE:
MSMg01no392_n10.g1 PHD_FILE: MSMg01no392_n10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:30 2005
         (236 letters)



>mm_chr8_102511015_102511650
          Length = 636

 Score =  426 bits (220), Expect = e-124
 Identities = 232/236 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcaaaaatgtctgagaggagactgttttttggggttttatttccacgattcccaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 436 actcaaaaatgtctgagaggagactgttttttggggttttatttccatgattcccaataa 377

                                                                       
Query: 61  tgctttgaactttaaccaaaacttttccaacgtaaagaataaattatgaaaaaggttata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tgctttgaactttaaccaaaacttttccaacgtaaagaataaattatgaaaaaggttata 317

                                                                       
Query: 121 aatctcattaaaatctaatattcagcaaagctgcctggtgtgtacactatggaaaattgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 316 aatctcattaaaatctaatattcagcaaagctgcctggtgtgtacactatggaaaattgg 257

                                                                   
Query: 181 ttgttactgtaactggagccctatgtataatattggaagttaattacagagggcag 236
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acgttactgtaactggagccctatgtataatattggaagttaattacagagggcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)