BAC Information

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BAC

Clone NameMSMg01-393C17
Chromosome8 (Build37)
Map Location 124,001,432 - 124,001,905
singlet/doubletsinglet
Overlap genenone
Upstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
Downstream gene1700018B08Rik, Fbxo31, Map1lc3b, Zcchc14, Jph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393C17.T7 (MSMg01no393_c17.b1)MSMg01-393C17.TJ (MSMg01no393_c17.g1)
ACCAG494532AG494533
length783776
length of high quality
(start - end)		486 (32 - 517)449 (66 - 514)
definitionCHROMAT_FILE: MSMg01no393_c17.b1 PHD_FILE: MSMg01no393_c17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:59 2005CHROMAT_FILE: MSMg01no393_c17.g1 PHD_FILE: MSMg01no393_c17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGCATCCGCGGAATTC
TTTGAAGATACTCATCTTCCTGTCCTGTTTGGAAAAGTTGCCGGCTGAGG
AAAAAGGAAACCGCCCGCCCCATTAGGGTCCCGGGTCTGGGGTTGTAAGG
ATGGAATTTGGAACTTTCTTGGAGAGTTTACAAGAATTCAACCTGTTTAG
AGAAGGGTTCTGAGGAGCCCAAGGGCTGCATGTTAGGGAAGCACTCACCT
TCCAGGGACACACAGAAAGACGCCTCTGAGCGTCTGAAGGCTGGATGGAG
GTGAATCATTCTTAGGGTGGAATGTCCTGTCTCTCTCAGCTCTGAGCCGC
TCTGGGATGGGAAGCTGGCTCTCTCATCTTCCAGCTCCTGGCTTTGACAC
TGATATGGGCCTTGGGCTGGTCCTCTTCAGTTATATCAAGAGAGAAATTG
TTTTGGGGCATTAGTGGCATTTTAAGGATATTGATGATAGAATAAATAGC
TGGCTTAAGTAGAGCATTTATAACATTTTTTAAAGTCAGTACACAAAGGA
ATACATTTTTTTTCCATTTTCTTTTTTTTGGGCGTGATGNATATGGACAT
TGACAAACCCCCCCCCACCCCAAAAAATGGTTTTTGGTTAAATTTTAAAT
AATTTTTAATTTTATTACACCGGGTATGGAAGGCCCCCCCTCCCAGTGGG
TGTAACACTTGGATATGGTTTCTTCTTTTCCCTTTTTTTCTCTCCCTCCT
CGGTCCAAATAAACCCTTTCTCTCTTTTAATTA

TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACCAGTGATGGGGAAGACAGAGTGTCATGCTCTCC
ATCTCGGTCCGGGAGCCCAGCACGGGACCATGGGAGCCAGCAGAGCCTAA
CTCTCAACTCAAGGCCTTGACTCTAACTCTTGGCTTCTCTGTCCCTTTCA
TGGGTCAACCTGACACCCCAGGATGCCAATTTGGGACCCCAGGTCCAACC
TACCCTGTCTTGGGAGCTTTTTGAGAGCAAGCAGCGCCGAGCAGTGGTGG
CACGTGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGAGGCA
GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGA
GGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGG
CAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGAGGCA
GAGGCAGAGGCAGAGGCAGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAG
GGCAGCCTGGTCTACCAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAG
AAACCCTGTCTTGGAAAACCCAACCCTAAACAGAGATGCGAATCGCGCCC
CCTCTCCTTTTTTCCTCTCCCCTTTTTTTCTCCTCCTCTATTTCTTCTAT
TCTATCTTCGTTTCATTCTTATTTTATGTTCCACTTTTTTATTTTTTCTT
TTTTATAGTTTTTTATAATTTTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_c17.b1 MSMg01no393_c17.b1 CHROMAT_FILE:
MSMg01no393_c17.b1 PHD_FILE: MSMg01no393_c17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:59 2005
         (486 letters)



>mm_chr8_124001219_124002105
          Length = 887

 Score =  878 bits (454), Expect = 0.0
 Identities = 469/474 (98%), Gaps = 1/474 (0%)
 Strand = Plus / Minus

                                                                       
Query: 14  gaattctttgaaga-tactcatcttcctgtcctgtttggaaaagttgccggctgaggaaa 72
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattctttgaagactactcatcttcctgtcctgtttggaaaagttgccggctgaggaaa 628

                                                                       
Query: 73  aaggaaaccgcccgccccattagggtcccgggtctggggttgtaaggatggaatttggaa 132
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 627 aaggaaaccgcccgccccattagggtcccgggtctggggttgcaaggatggaatttggaa 568

                                                                       
Query: 133 ctttcttggagagtttacaagaattcaacctgtttagagaagggttctgaggagcccaag 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctttcttggagagtttacaagaattcaacctgtttagagaagggttctgaggagcccaag 508

                                                                       
Query: 193 ggctgcatgttagggaagcactcaccttccagggacacacagaaagacgcctctgagcgt 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ggctgcatgttagggaagcactcaccttccagggacacacagaaagacgcctctgagcgt 448

                                                                       
Query: 253 ctgaaggctggatggaggtgaatcattcttagggtggaatgtcctgtctctctcagctct 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ctgaaggctggatggaggtgaatcattcttagggtggaatgtcctgtctctctcagctct 388

                                                                       
Query: 313 gagccgctctgggatgggaagctggctctctcatcttccagctcctggctttgacactga 372
           |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 387 gagctgctctgggatgggaagctggctctctcatcttccagttcctgactttgacactga 328

                                                                       
Query: 373 tatgggccttgggctggtcctcttcagttatatcaagagagaaattgttttggggcatta 432
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatgggccttgggctggtcctcttcagttatatcaagagagaaattgttttggggcatta 268

                                                                 
Query: 433 gtggcattttaaggatattgatgatagaataaatagctggcttaagtagagcat 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gtggcattttaaggatattgatgatagaataaatagctggcttaagtagagcat 214


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space:   417452
Effective search space used:   417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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