BAC Information

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BAC

Clone NameMSMg01-394I09
Chromosome8 (Build37)
Map Location 9,928,592 - 9,928,947
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem28
Downstream geneLig4, Abhd13, Tnfsf13b, Myo16, LOC100040008, LOC384782, LOC100040507, LOC665306
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394I09.T7 (MSMg01no394_i09.b1)MSMg01-394I09.TJ (MSMg01no394_i09.g1)
ACCAG495560AG495561
length769761
length of high quality
(start - end)
74 (341 - 414)373 (54 - 426)
definitionCHROMAT_FILE: MSMg01no394_i09.b1 PHD_FILE: MSMg01no394_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:56 2005CHROMAT_FILE: MSMg01no394_i09.g1 PHD_FILE: MSMg01no394_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCTTCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTTTCAATTACCTTAAAAATGAGTCACACTGGAATTTT
CCAGAGAAAAGTTTACAAAAAAAAAAGGACAAATTTACTTCTTATTTTAT
AGAGGCAACACAATCTTACTACAGATACCTACTACGAATATTACAGGCAG
CAATTGTGAAGTGCTTCAGTAAATCTCATGTATAAAGATGCAAACAAAAT
CTATGTGAGTTTTTAAAAAATGCACTGCTGCTATATTTTTATATAATCGT
GACCAAAGTAGGATTTAGCATTACTTCAGGTATGTCTATACCATTTATAA
TATGTGACAAAGTGGATAAAAATCTTTGTCATGTTTTGATTACCACCTGC
AAATTAAACACACTCTCACACACACACACACACACACACTCTTGCACACT
CACACACACACAGTCTGTTTGGCTCTAGTAAAAAGTATAACCTAATCAGG
ATATAATCATGATGATGCCTGAGTTCAACTCTTGATTTCATAGTTCAGCC
CCGACTACCACTTACCTGTACTATACAGGCCCTTGTGCGTCTGTCCACCG
CTGATAGTGCTGTCACTTTTAGTGTTTCCCTTTTACATTGGCCCTACGTT
GTGAGTTTTGCGGTTGAACCTTTTCATTTCCCCCGAGAGTCCCTTTCCAA
TGTCACTGTTCTCCCTTTACTTTTGTTTTTTGCCCCCCCTTTGCACTGGG
GTTCCTTCCCTAACCCTTT
CTTTTCCGAATATATGTGTAGCCTGGGGGNCGCCTGGCTCACAAATTTAG
GNGAACTATAGAAGTTTCGCGAAATTCCACACTCTAGAAGAATACCCTTC
ATGAGCAACAGGCGTTTATGAGATGCACAGACCTGCATACAGGCACAATA
TCCATTCCAGTAGAATTAAATAAACACACACACACACAAACATGCACATG
TATGTGTGTGCACACGCATGCATATGCACACCCATGCATACACTCATGTG
TGCACATGCACACACCTAGACTACACAGCAGCACTGAATGTATGCTCACT
CATCAGTGGTTTTTGATTGCACATTATTCTCTTCATTGGTCTGTTTGAAA
GTTACGCCTTCATACCTTTCCAGCACATTGAGGGAAGTTCCATTTGAGTC
AGAATAATCCAACCATAGGCTATGCAGAATGAGGATGACATTCTGCCATG
TGGTATTTACATCATTCCATGGGGGACGCATTTTTAAGGTGCTTACTTTT
TGAAATGCTGAACTCAAAGTAACAGATGGACGCCGTTCTGTAAATATGTG
TCCTTCCTGTCACCTCCAAATTGTTGACATCCCCACAAAGATCCCAATTC
CTTTATGCCTCACCAAGCATCATATCAACCTGCCACTCTCAATTTCCCCG
TTCTAACCCACTTACCTCGTCATCTAATGCCCATCTACCGCGTACTTCCT
TCTTTTATCCGGCGGACCACATTACAGTTCCTGTTCCATCCTCCATTAAC
TCTTCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_i09.g1 MSMg01no394_i09.g1 CHROMAT_FILE:
MSMg01no394_i09.g1 PHD_FILE: MSMg01no394_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:56 2005
         (373 letters)



>mm_chr8_9928180_9928952
          Length = 773

 Score =  646 bits (334), Expect = 0.0
 Identities = 350/356 (98%), Gaps = 2/356 (0%)
 Strand = Plus / Minus

                                                                       
Query: 20  aattccacactctagaagaatacccttcatgagcaacaggcgtttatgagatgcacagac 79
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 768 aattccacactctagaagaatacccttcatgagcagcaggcgtttatgagatgcacagac 709

                                                                       
Query: 80  ctgcatacaggcacaatatccattccagtagaattaaataa--acacacacacacacaaa 137
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 708 ctgcatacaggcacaatatccattccagtagaattaaataaacacacacacacacacaaa 649

                                                                       
Query: 138 catgcacatgtatgtgtgtgcacacgcatgcatatgcacacccatgcatacactcatgtg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 catgcacatgtatgtgtgtgcacacgcatgcatatgcacacccatgcatacactcatgtg 589

                                                                       
Query: 198 tgcacatgcacacacctagactacacagcagcactgaatgtatgctcactcatcagtggt 257
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 588 tgcacatgcacacacctagactacacagcagcactgaatgtatgctcactcatcagtgtt 529

                                                                       
Query: 258 ttttgattgcacattattctcttcattggtctgtttgaaagttacgccttcatacctttc 317
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ttttgattgcacaagattctcttcattggtctgtttgaaagttacgccttcatacctttc 469

                                                                   
Query: 318 cagcacattgagggaagttccatttgagtcagaataatccaaccataggctatgca 373
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 cagcacattgagggaagttccatttgagtcagaataatccaaccataggctatgca 413


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)