Query= MSMg01no394_j24.b1 MSMg01no394_j24.b1 CHROMAT_FILE:
MSMg01no394_j24.b1 PHD_FILE: MSMg01no394_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:04 2005
(463 letters)
>mm_chr8_16455802_16456664
Length = 863
Score = 783 bits (405), Expect = 0.0
Identities = 449/469 (95%), Gaps = 12/469 (2%)
Strand = Plus / Minus
Query: 1 ttcagaacactctcc-gtacagaggaggactgggaaaagatgttcattccatgccaggtc 59
|||||||||||| || | | |||||||||||||||||||||||| |||||||||||||||
Sbjct: 663 ttcagaacactc-cctggatagaggaggactgggaaaagatgtttattccatgccaggtc 605
Query: 60 atttcattaaaaatctgttctaaagatatcgaaagaatgctgaaaacaatacaaagacat 119
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 604 atttcattaaaaatctgttctaaagatatcgaaagaatgctgaaaacaatgcaaagacat 545
Query: 120 tatatttgttactgtctttatggaattacagagtttcacaaccaagctgacttctgtttc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tatatttgttactgtctttatggaattacagagtttcacaaccaagctgacttctgtttc 485
Query: 180 ccagggaagaagaaattagattgtccataactgataaccttgccttcagtctatgagaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ccagggaagaagaaattagattgtccataactgataaccttgccttcagtctatgagaag 425
Query: 240 ttttgagataaatatgccagagattttactgaggtttttt-----tgctcattatttaga 294
|||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 424 ttttgagataaatatgccagagattttactgagg-----tgaacatgctcattatttaga 370
Query: 295 gccaattttaaggaacttgatagatactctgtgatgtggcccatgaaagggagagttcag 354
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 369 gccaattataaggaacttgatagatgctctgtgatgtggcccatgaaagggagagttcag 310
Query: 355 ggatggggctgatatacgcaatagagtaatggctctgcctttctcagtgttgttacaaaa 414
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 309 ggatggggctgatataggcaatagagtaatggctctgcctttcttagtgttgttacaaaa 250
Query: 415 cttgatgcccaagatcagccagagtcacctaggtgtgaactactaacct 463
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 cttgatgcccaagatcagccagagtcacctaggtgtgaactactaacct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space: 386409
Effective search space used: 386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_j24.g1 MSMg01no394_j24.g1 CHROMAT_FILE:
MSMg01no394_j24.g1 PHD_FILE: MSMg01no394_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:04 2005
(439 letters)
>mm_chr8_16261718_16262556
Length = 839
Score = 833 bits (431), Expect = 0.0
Identities = 437/439 (99%)
Strand = Plus / Plus
Query: 1 acactgagaagttactttccccataacagagcaagagacacagtgagggccaagtacagt 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 acactgagaagttactttccccataacagagcaagagacacggtgagggccaagtacagt 260
Query: 61 gagctagagagctgcgagtgaatagaagtcaaaatcctgacagaaggtgtagtgctcctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctagagagctgcgagtgaatagaagtcaaaatcctgacagaaggtgtagtgctcctt 320
Query: 121 gactgcaccttacagaaaggcatggcagattctgtgttccctcctccctccctcccagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgcaccttacagaaaggcatggcagattctgtgttccctcctccctccctcccagcc 380
Query: 181 ccaagctccacccagcagaaggaagcatttaaatgtttttcgtgcattacctcaaggttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaagctccacccagcagaaggaagcatttaaatgtttttcgtgcattacctcaaggttg 440
Query: 241 ttacttcaaataagggcgaaggggttctgatctccaaatcaggggcattcaaatggtaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacttcaaataagggcgaaggggttctgatctccaaatcaggggcattcaaatggtaaa 500
Query: 301 tccagaagaattacagaagttaaaattacacgatgatccgggagaaaatgtgagaatgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccagaagaattacagaagttaaaattacacgatgatccgggagaaaatgtgagaatgta 560
Query: 361 attcccttgcttttaaaacacttgaacccaaaccccagaaagtctgtgcactgctgcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcccttgcttttaaaacacttgaacccaaaccccagaaagtctgtgcactgctgcagc 620
Query: 421 gtttccacgcctatattag 439
|||||||| ||||||||||
Sbjct: 621 gtttccacacctatattag 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
