BAC Information

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BAC

Clone NameMSMg01-394N18
Chromosome8 (Build37)
Map Location 12,448,005 - 12,448,237
singlet/doubletsinglet
Overlap genenone
Upstream geneCol4a2, Rab20, 0710008K08Rik, Cars2, Ing1, Ankrd10, 1700016D06Rik, EG665271, LOC665363, LOC624710, LOC665373, Arhgef7, 1700018L24Rik, LOC100040155, LOC100040175, EG434280, EG434279, Sox1
Downstream gene1700094C09Rik, Tubgcp3, Atp11a, LOC100040229, Mcf2l, F7, F10, Proz, Pcid2, Cul4a, Lamp1, Grtp1, Adprhl1, Dcun1d2, Tmco3, Tfdp1, Atp4b, Grk1, Gm687
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394N18.T7 (MSMg01no394_n18.b1)MSMg01-394N18.TJ (MSMg01no394_n18.g1)
ACCAG495816AG495817
length800811
length of high quality
(start - end)
---233 (75 - 307)
definitionCHROMAT_FILE: MSMg01no394_n18.b1 PHD_FILE: MSMg01no394_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:24 2005CHROMAT_FILE: MSMg01no394_n18.g1 PHD_FILE: MSMg01no394_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:40:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCTCTTACTTGAGGTGCTAAATCACTGAAAATTCAAAAGAGAGTGCGGA
ATNNCACCTCTCTCAAAAAAAAAGTAGGAGGAGAGACCCGCGTCCTGGTC
TGCGTCTTTATAATCTTTGAGCCCACCCCCAGAGATAATACTTTTTCCAG
TAAAGCCACTCCTATCATTCTTTTTAATGAGTGCCGCCCCTTGAGAACTA
ATTATTCCAACACTTCGAGCCTACCGGGGTAATTCTCTTGCAAAACACTA
TCTGGGATATAGGGCCTCATGCGCTTATCTGTATCGACCAACGGCGAGAC
ACACTTGCACGTACAGCATATTTTTTTCTCCGCCCAGGATTAGCGAGATA
CATTGAAAGATTAGATCTATCCCCACTTATCATTCCAGCTAGTTTTCATT
TTTGCCTTCACTCCCCCCCCCCCATTGATTTTTACACAGATCATTTGTTT
TAGTCCCCATTTTCCTTAGCCTGACCCTAGTCTTGGATCCATTCATCGTT
CACCTCCCTGACTTTGTATCTTAAGCTCCAACACACCCCAACCTTCTCCA
TTCTTCCAATCCTTTACCCCCCCCCTTTCGCGTGATTATTCCCTCTCCCC
CTATTCCGTCTATAACACCCGTCGTCTTTCTCCCTATTCCCTTGATTCTT
CACTATAAACAACCTTTTCGCTATTCTATTTATTCCAATGATTACTTTAC
CCACGCACCTATAACTATTCCCTTTTTAATCCACTATCTTTTTTGCTTTT
TACCCGCCTTTTATTGCGCATTATGTGTCCCGTACGTTCCTTTTCCCCTC

TCCATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTCCATGTCTCACTGACATCTCTTT
CTGCATGTTCAGACACCAGCTGCCATTCTATGCCACATGGGTTATACAGG
CACTGGGGAGGGGGTGCATTTAAAAAACCCCCAGTGCAAAGAATTGCACA
GGTATTGTTAGAGTCCTGGGAATAGCACTACAGTGTTCTGCGGCCACACA
CAGTGTAAGGCTGGTGGAAGTGCTGTGAAATTGCTACTGGCTTCTGGATA
TTTGCATTAAGGAAGTATACTATCATCTGCTCTTATCCAAAACCCAAGCT
ATATTCTGTGTGTTAGCAAGTGTGCGTCTGCGCAACTCAACATTACATCT
ATTGCCATTATGTCATCTTGCCCACATTTCTTTGAGCGCACACTGCGTGT
TTTTGTTTTCGCTCTATGTCTTCAAGACTTATTGTTGCGTTACCCCCCCC
TTGACTCTCCCTCTTCCTCTTCTCAGTCTCCACTCGTTCTGTTCCCTTTC
CCTTTCATTACCCTTTTCCCTCCCCCCCCCCATCTCCCTTACTCTCTGTT
CTACTTCTTATCCGTCTCTTCCCCTTCACTTTTTCGTTTCCCTCCTACCC
TTTTTTTCTTCCCACCCCCTATACCTTATTCACTCGACCTCTATCTTCCT
AATAATTTCCCTCTCCACCCCCCTCTATAATCGATCTCATTACAATCCTC
ACTTCCCCATTATCCCTTCCCCCTCTTCTCCCTTCCCTCTTCCTCTTTCC
CTTTTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_n18.g1 MSMg01no394_n18.g1 CHROMAT_FILE:
MSMg01no394_n18.g1 PHD_FILE: MSMg01no394_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:24 2005
         (233 letters)



>mm_chr8_12447805_12448437
          Length = 633

 Score =  443 bits (229), Expect = e-129
 Identities = 232/233 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctccatgtctcactgacatctctttctgcatgttcagacaccagctgccattctatgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccatgtctcactgacatctctttctgcatgttcagacaccagctgccattctatgcc 260

                                                                       
Query: 61  acatgggttatacaggcactggggagggggtgcatttaaaaaacccccagtgcaaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatgggttatacaggcactggggagggggtgcatttaaaaaacccccagtgcaaagaat 320

                                                                       
Query: 121 tgcacaggtattgttagagtcctgggaatagcactacagtgttctgcggccacacacagt 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcacaggcattgttagagtcctgggaatagcactacagtgttctgcggccacacacagt 380

                                                                
Query: 181 gtaaggctggtggaagtgctgtgaaattgctactggcttctggatatttgcat 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtaaggctggtggaagtgctgtgaaattgctactggcttctggatatttgcat 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)