BAC Information

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BAC

Clone NameMSMg01-395G20
Chromosome8 (Build37)8 (Build37)
Map Location 115,121,358 - 115,121,804115,294,467 - 115,294,711
singlet/doubletsingletsinglet
Overlap geneCntnap4
Upstream geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395G20.T7 (MSMg01no395_g20.b1)MSMg01-395G20.TJ (MSMg01no395_g20.g1)
ACCAG496247AG496248
length806814
length of high quality
(start - end)		447 (71 - 517)246 (73 - 318)
definitionCHROMAT_FILE: MSMg01no395_g20.b1 PHD_FILE: MSMg01no395_g20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:16 2005CHROMAT_FILE: MSMg01no395_g20.g1 PHD_FILE: MSMg01no395_g20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:07:16 2005
singlet/doubletsingletsinglet
BLAST hituniqueplural
Map location.(115,121,358 - 115,121,804)(115,294,467 - 115,294,711)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAAT
TCCTGAGATGTCACCTGAGATTGTACCTCTGGTCATTTCATGCACACAGA
TTCACACACACTTGCACCTGCGTGCACCCACTCACACTTACATATATGCA
TACACTCACACATTAAAGAAATAGAATACTGGTCAGATAATAAAGGGGGA
ATGTGGGACTGACAGCTTAATCAGCACAGAAATGAAGCTTTATGGAAAAT
AAAAATATGCCCAAAGACTTCAGCAAGAAATTTAAATTCTCTGACCTTCA
GTGCAGAAAACGGGAAATGGTCAGATGTTTTTCAAGGGGTTTGTGTAAGG
ATTTAACTGCTTGGGACATCATGTGAAGACCCATGATTATCATGGTGTGT
TAGCCAGGGTTTAAATGCCTATAGGGATTAGCAGAAGGGTCTAGTGGAAG
AAAGACTTATTGGAGCTCACGATTTTAGAGATGTCTGTTTGTGGTTGGCT
GGCTCCATTGCTTTGGACCCAGGGTAAAGCAGAGCATCGTATTGAAGTGC
ATGGTGGTGTGGAGTTATTCCCTTCATGGTTATAAGGGTCTTTTCCAAGA
GCCTGTTACCTTCTTGGCACCCACACTTGTTTTTCCTAGGCACGTTTTTT
CCCTTGGCCATTTTTCTTTTAACAGTTCTTTATTTCCCTCATTTCTCCCC
CCTCTTTCGCAGCCCAATTCCCACTTTTTTTCCCGTTGCGCACAAATAAA
ACCTTGTGCTCTCCCTTTCCCTACTCATTGTACCAGTTTCTCTTTAACTT
ATTTTN

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGTGTCCCCAAAACATTCAAGGCAGAGG
ATTCCAAGTGGGCATCACATCTTTCCTGGCATCCTTTGGGGATTATTGGC
AAAGGTATGTTTGGGGAAGGGATGAGGTAGGGTCTCTAAGGCGCTCCACT
GGCCTGATTGTTAGGCTGCCATTAGCAGTGGGATAAACACATGCTTGATT
TGTCTAGCTGAAAGCTTAGCGTCCCTCCCCAGCATCCTGTCACTGTTGGT
CATCACTGAAAACTTTGTTTANTTGACAGGGGACACTTATCACTGGAGCT
CTGTTTTCATCTAGATAGAACTCAGTTTTGAGATGGCTAATTCTTCACCA
GCTTATATTCAAGGCTAAAAAAAGATCCACATGTTCTGAGAGATTTCCCA
TGAACTCTTCTTTGCTGTTCTCCCCATTCAACTGCAAGTTCAAAGCGATG
GACACTCCATCTAACTCCTTTTGGAAGCAGACTGCCCACTCCCCCTTACT
TACCTTAATCCCCAATAGCGTGTGCTCCCCGCTGTATCTCTGATCCCCCT
GTGCCCTCTTCCCTGGTCCCCTAATCCTACACCCACGATCCCCTACGTTT
CCCTCCTCTTTTTTTCTCTCCACCTCCTTGCTCTCCTACACCCTTCTAGC
CTTGCTGAACCTTTTCTTTTTTTTACTCCCTCCTTCCCCCTCTCTCCCTG
TCCTGTCCCTCTTTCCTTCATCTTCTTCTCTCCTTCCCCCTTCCCTTCTC
TCTCCTATACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_g20.b1 MSMg01no395_g20.b1 CHROMAT_FILE:
MSMg01no395_g20.b1 PHD_FILE: MSMg01no395_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:16 2005
         (447 letters)



>mm_chr8_115121158_115122004
          Length = 847

 Score =  849 bits (439), Expect = 0.0
 Identities = 445/447 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtacctctggtcatttcatgcacacagattcacacacacttgcacctgcgtgcaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 ttgtacctctggtcatttcatgcacacagattcacacacacttgcacctgcatgcaccca 260

                                                                       
Query: 61  ctcacacttacatatatgcatacactcacacattaaagaaatagaatactggtcagataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcacacttacatatatgcatacactcacacattaaagaaatagaatactggtcagataa 320

                                                                       
Query: 121 taaagggggaatgtgggactgacagcttaatcagcacagaaatgaagctttatggaaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagggggaatgtgggactgacagcttaatcagcacagaaatgaagctttatggaaaat 380

                                                                       
Query: 181 aaaaatatgcccaaagacttcagcaagaaatttaaattctctgaccttcagtgcagaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaatatgcccaaagacttcagcaagaaatttaaattctctgaccttcagtgcagaaaa 440

                                                                       
Query: 241 cgggaaatggtcagatgtttttcaaggggtttgtgtaaggatttaactgcttgggacatc 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgggaaatgggcagatgtttttcaaggggtttgtgtaaggatttaactgcttgggacatc 500

                                                                       
Query: 301 atgtgaagacccatgattatcatggtgtgttagccagggtttaaatgcctatagggatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgtgaagacccatgattatcatggtgtgttagccagggtttaaatgcctatagggatta 560

                                                                       
Query: 361 gcagaagggtctagtggaagaaagacttattggagctcacgattttagagatgtctgttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagaagggtctagtggaagaaagacttattggagctcacgattttagagatgtctgttt 620

                                      
Query: 421 gtggttggctggctccattgctttgga 447
           |||||||||||||||||||||||||||
Sbjct: 621 gtggttggctggctccattgctttgga 647


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no395_g20.g1 MSMg01no395_g20.g1 CHROMAT_FILE:
MSMg01no395_g20.g1 PHD_FILE: MSMg01no395_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:16 2005
         (246 letters)



>mm_chr8_115294267_115294912
          Length = 646

 Score =  427 bits (221), Expect = e-124
 Identities = 239/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtccccaaaacattcaaggcagaggattccaagtgggcatcacatctttcctggcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgtccccaaaacattcaaggcagaggattccaagtgggcatcacatctttcctggcat 260

                                                                       
Query: 61  cctttggggattattggcaaaggtatgtttggggaagggatgaggtagggtctctaaggc 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 cctttggggattattggcaaaggtgtgtttggggaagggatgaggtagggtctctaaggc 320

                                                                       
Query: 121 gctccactggcctgattgttaggctgccattagcagtgggataaacacatgcttgatttg 180
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||
Sbjct: 321 actccactggcctgattgttaggctgccattggcagtgggataaacacatgcttgaaatg 380

                                                                       
Query: 181 tctagctgaaagcttagcgtccctccccagcatcctgtcactgttggtcatcactgaaaa 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctagctgaaagcttagtgtccctccccagcatcctgtcactgttggtcatcactgaaaa 440

                
Query: 241 ctttg 245
           |||||
Sbjct: 441 ctttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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