Query= MSMg01no395_l13.b1 MSMg01no395_l13.b1 CHROMAT_FILE:
MSMg01no395_l13.b1 PHD_FILE: MSMg01no395_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:39 2005
(485 letters)
>mm_chr8_24506510_24507395
Length = 886
Score = 880 bits (455), Expect = 0.0
Identities = 479/487 (98%), Gaps = 3/487 (0%)
Strand = Plus / Minus
Query: 1 acttgccacaccaaacacctttgccatttggattggatcctgtactgaggagaggagaga 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 686 acttgccacaccaaacacctttgccatttggattggatcctgtaccgaggagaggagaga 627
Query: 61 tgggggaaagcgtaccttgggtgttgcaaagaatatctgggttatctgcggagtc-aaag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 626 tgggggaaagcgtaccttgggtgttgcaaagaatatctgggttatctgcggagtcaaaag 567
Query: 120 gtattcatcccttctgggggaagtctgtgggacctatgtgtcccttgaatggagaaggaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtattcatcccttctgggggaagtctgtgggacctatgtgtcccttgaatggagaaggaa 507
Query: 180 acagagttcagtgactcagatatctgaagcatggctaggtacgagccaggagccaaaaag 239
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 506 acagagttcagtgactcagatatctgaagcatggctaggtatgaaccaggagccaaaaag 447
Query: 240 gcttataaggatttctcacaaagccaccaaatcctgaacagaaggaagcacattcatcct 299
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcttataaggatttcccacaaagccaccaaatcctgaacagaaggaagcacattcatcct 387
Query: 300 tgggatccaacttggcttctctag-aggaaagccatgtgtgaatttccagccttgttctt 358
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 386 tgggatccaacttggcttctctagaagg-aagccatgtgtgaatttccagccttgttctt 328
Query: 359 tatccacgcacacttgcccctgggtcccagacaccccagggctcatctgagacctcctat 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tatccacacacacttgcccctgggtcccagacaccccagggctcatctgagacctcctat 268
Query: 419 ttctacaccccactcctatcaagtgctgtcaatatctcccaccaagagcatcttcaggaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttctacaccccactcctatcaagtgctgtcaatatctcccaccaagagcatcttcaggaa 208
Query: 479 acctgta 485
|||||||
Sbjct: 207 acctgta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 886
Length adjustment: 10
Effective length of query: 475
Effective length of database: 876
Effective search space: 416100
Effective search space used: 416100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no395_l13.g1 MSMg01no395_l13.g1 CHROMAT_FILE:
MSMg01no395_l13.g1 PHD_FILE: MSMg01no395_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:07:39 2005
(512 letters)
>mm_chr8_24327395_24328313
Length = 919
Score = 888 bits (459), Expect = 0.0
Identities = 503/531 (94%), Gaps = 22/531 (4%)
Strand = Plus / Plus
Query: 4 tctatactggagccagtgttcggctcctcagtgttcggctcaccatcctgagcagtgttc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tctagactggagccagtgttcggctcctcagtgttcggctcaccatcctgagcagtgttc 248
Query: 64 g---------------gcttcacagtgttcggctcaccgtcctgagcagtctacctctcc 108
| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ggcttcacagtgttctgcttcacagtgttcggctcaccgtcctgagcagtctacctctcc 308
Query: 109 cagctatgcctcaaacccaaaggttacaggattatttagcccagcatcaaagcaggccca 168
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 309 cagctatgcctcaaacccaaaggttacaggattatttaacccagcatcaaagcaggccca 368
Query: 169 agtgctcaaacacaagcctggcctctactctccatggtctctagagacactttgtaattt 228
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 369 agtgctcaaacacaagcctggcctctactctccatggtcactagagacactttgtaattt 428
Query: 229 aagtttcattccatcatatcttggtttaaagcctttcagagttcccaactgttagtacag 288
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 aagtttcattccatcagatcttggtttaaagcctttcagagttcccaactgttagtacag 488
Query: 289 attctggactctacaactggataaatcactctttaaag-------tctccttaagtctcc 341
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 489 attctggactctacaactgggtaaatcactctttaaaggcttacgtctccttaagtctcc 548
Query: 342 tttagaagacagaaactgcctctccacacaccaatctcatgcatggtttgccaagcccag 401
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 549 tttagaagacagaaactgcctctccacacaccaatctcatgcatggtttaccaagcccag 608
Query: 402 ctccttggagttgcctcctcctggacgctgtggcttcccaaccatccagtcttcccttct 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ctccttggagttgcctcctcctggacgctgtggcttcccaaccatccagtcttcccttct 668
Query: 462 tgcctgaccactgctccggtgttttaactttggactagcgcaccttgttgg 512
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tgcctgaccactgctccggtgttttaactttggactagcgcaccttgttgg 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 919
Length adjustment: 10
Effective length of query: 502
Effective length of database: 909
Effective search space: 456318
Effective search space used: 456318
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
