BAC Information

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BAC

Clone NameMSMg01-396H08
Chromosome8 (Build37)
Map Location 39,812,239 - 39,965,470
singlet/doubletdoublet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396H08.T7 (MSMg01no396_h08.b1)MSMg01-396H08.TJ (MSMg01no396_h08.g1)
ACCAG497031AG497032
length759746
length of high quality
(start - end)		482 (34 - 515)231 (314 - 544)
definitionCHROMAT_FILE: MSMg01no396_h08.b1 PHD_FILE: MSMg01no396_h08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:35 2005CHROMAT_FILE: MSMg01no396_h08.g1 PHD_FILE: MSMg01no396_h08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,812,239 - 39,812,713)(39,965,241 - 39,965,470)
sequence
TGCGTCCGCTATACGACTCACTATTTTCAGAGGATCCGCGGAATTCCTGA
GTCTTCCTAGGTGCTCAGAAAATGCTTATTGATGACATAAGTAGTCATCA
AAGTAGCACAGCCCTAAAGGGAAAGCAGCAAGAAAGACAAAAGTAAGAGC
ACATGAGAACGTGACTGAATTAATAGGGAAAGGAAAATAGAAAAGTAGTG
GATTTAAGTAAGAGCAGAGGTGTGTGTAGCCTGTAACAAGGAAAAGACAT
GGAAACTATGTGGATGCTCTATAAAATGACCCAATTATAACTGCCTTTCC
TGACAGTGTCAGACTTCTAAACAATCCACTGGTGCCTATTTCTATTCCCC
CTCTGCATCTGTGGCACCAGCACTGACTGACTTGTTACTGAACTGTCAAT
GTTAGAGGGTCATAGGAAATTACAGTAGGGTGACAACACTGTGATAACCT
TATTAACTTCGTAATGTGAATGTGGATAAAAAGAATGTCTTCCATTGGCC
TCAATATTCCCTTTCATTAATTGCTTGTGTACTGGATAATCTACAAGCCT
TTAACATCACAGTCGCACATATTCTCAGAGTGTGAAGAAATGTTATAGAA
TATTCAAATCCGATTCCCAGTCGGTACTTAAATCCCCTCATTGCCCTATC
TCTGGGAAACGGTTCCTCCCCTTTTAAAATTCCCCAGCCCTCCCGTGGCC
AAAAACCCAAATATTTCCCTTCCTGGGTCCCCTCTTTAGGGGGCTTCTTT
CCGCTTGAG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACATAGTTGATTCAGTGGGCCATGTTCTCTTGGTAT
CTGCCATCCATTCCCTCTCACTGCTACAGTCTTTCCTCCCTTTCCTGAGG
CTCCGTCATCTCTAAGTGAATCTGCTCCCTCCACTTGGTTACTTTTCTTT
ATACTCTTCCTTGTAATAGATTCAGAAAATGTTTTCTACATGGGAGTCCT
CTGTTGTGTGGTCTCTTGGCTTCCCTTGTGTATTTTCCTCTGCATCTGGG
GAGCAGTGTTGTTTTTGTCCTGCTGACACTGAACTATTCTTCTGGAGTCT
CAGTCTTACTGGCAGCATAACTCTCTACTTATTTTTATTTGAAATCTCAT
TGACTTTGTTTCTTTTAATCTGATTTTGTGACCAAATAATGTTTTTGTAC
AACTTCGGGCTTTTTTCAGCCCTAAATGTGAACTTTTGTTTTTCTTTCAT
ATATTTTATTTTATATAGTATTTAAAAACTTTTCTTATATTTAACAAATT
CTTAAAGAAATGGATTGATTTTAGAGTTTGTTCTTCCATAGTTTGAAATT
ATTTGGAAGTGTCTAAACTCATTTTGTTTTTTGCTTGTTTGTTTGTTTTT
TTGTCCGGTACATTCACGTCTCTTCTACCTACTCTTAATATTGGTTTTTT
GTTATCCCCTTCCTTTTTTTTTTTATCTCCCTTTTTCCTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_h08.b1 MSMg01no396_h08.b1 CHROMAT_FILE:
MSMg01no396_h08.b1 PHD_FILE: MSMg01no396_h08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:35 2005
         (482 letters)



>mm_chr8_39812032_39812913
          Length = 882

 Score =  911 bits (471), Expect = 0.0
 Identities = 474/475 (99%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcctgagtcttcctaggtgctcagaaaatgcttattgatgacataagtagtcatca 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcctgagtcatcctaggtgctcagaaaatgcttattgatgacataagtagtcatca 267

                                                                       
Query: 68  aagtagcacagccctaaagggaaagcagcaagaaagacaaaagtaagagcacatgagaac 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aagtagcacagccctaaagggaaagcagcaagaaagacaaaagtaagagcacatgagaac 327

                                                                       
Query: 128 gtgactgaattaatagggaaaggaaaatagaaaagtagtggatttaagtaagagcagagg 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gtgactgaattaatagggaaaggaaaatagaaaagtagtggatttaagtaagagcagagg 387

                                                                       
Query: 188 tgtgtgtagcctgtaacaaggaaaagacatggaaactatgtggatgctctataaaatgac 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgtgtgtagcctgtaacaaggaaaagacatggaaactatgtggatgctctataaaatgac 447

                                                                       
Query: 248 ccaattataactgcctttcctgacagtgtcagacttctaaacaatccactggtgcctatt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ccaattataactgcctttcctgacagtgtcagacttctaaacaatccactggtgcctatt 507

                                                                       
Query: 308 tctattccccctctgcatctgtggcaccagcactgactgacttgttactgaactgtcaat 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tctattccccctctgcatctgtggcaccagcactgactgacttgttactgaactgtcaat 567

                                                                       
Query: 368 gttagagggtcataggaaattacagtagggtgacaacactgtgataaccttattaacttc 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 gttagagggtcataggaaattacagtagggtgacaacactgtgataaccttattaacttc 627

                                                                  
Query: 428 gtaatgtgaatgtggataaaaagaatgtcttccattggcctcaatattccctttc 482
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gtaatgtgaatgtggataaaaagaatgtcttccattggcctcaatattccctttc 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 882
Length adjustment: 10
Effective length of query: 472
Effective length of database: 872
Effective search space:   411584
Effective search space used:   411584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no396_h08.g1 MSMg01no396_h08.g1 CHROMAT_FILE:
MSMg01no396_h08.g1 PHD_FILE: MSMg01no396_h08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:35 2005
         (231 letters)



>mm_chr8_39965086_39965716
          Length = 631

 Score =  445 bits (230), Expect = e-129
 Identities = 230/230 (100%)
 Strand = Plus / Minus

                                                                       
Query: 2   ttgtcctgctgacactgaactattcttctggagtctcagtcttactggcagcataactct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgtcctgctgacactgaactattcttctggagtctcagtcttactggcagcataactct 326

                                                                       
Query: 62  ctacttatttttatttgaaatctcattgactttgtttcttttaatctgattttgtgacca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctacttatttttatttgaaatctcattgactttgtttcttttaatctgattttgtgacca 266

                                                                       
Query: 122 aataatgtttttgtacaacttcgggcttttttcagccctaaatgtgaacttttgtttttc 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataatgtttttgtacaacttcgggcttttttcagccctaaatgtgaacttttgtttttc 206

                                                             
Query: 182 tttcatatattttattttatatagtatttaaaaacttttcttatatttaa 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tttcatatattttattttatatagtatttaaaaacttttcttatatttaa 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space:   138084
Effective search space used:   138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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