BAC Information

Click to search

BAC

Clone NameMSMg01-396H11
Chromosome8 (Build37)
Map Location 31,231,147 - 31,231,653
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189, LOC547008, Dusp26, Rnf122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396H11.T7 (MSMg01no396_h11.b1)MSMg01-396H11.TJ (MSMg01no396_h11.g1)
ACCAG497037AG497038
length882755
length of high quality
(start - end)
---507 (64 - 570)
definitionCHROMAT_FILE: MSMg01no396_h11.b1 PHD_FILE: MSMg01no396_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:36 2005CHROMAT_FILE: MSMg01no396_h11.g1 PHD_FILE: MSMg01no396_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTGCCTTATCGTATGTATTCTAAAATAAGAGGGAAACCGTTTGTTTCC
CTCCAAGTGTATCCCCTTATCCAAAACCCGACCCTGGCCCTCCCCGTGAC
CAGGCTCGCAGGTGTCCTTTTGTACCTACAACAATGAGTGATCGGCAGAT
TACGGGATGGGTAACCAGGTATTATAACCCCGTAACGTTCGCCATCACCA
ATAGCCTTGTTCCATTACGCTATGGTTCTGACCGACCTGTCTAAGGCTCG
TTGTTTATTGCTTCCCGTGGGCGTGGCGGGTGAGCGGGGAGACAATGATA
TCGTAAATAACAAAATACCAATCGCCATTTCTCTTTTCTTTTCCGTTAAT
ACTTAACAGCTAACAATTAAACTTAAAACAAGTTTTGTGGTCCTTCCCCA
CTTTGTTTTTAATCGATCCTTCCTCTCTACCTACATTTAAATAGATATAC
ATACTAACATAACATAACGAAGTCGTATACTGAAGACCGCGCCGTAAAGC
ATCGCTCCGTGTGTCCATTTTATTATGACAGTAAACTGTGGCGGGTAAAC
TATTCCCACTAATAATTAACACGCCCCAAACACCTGGGTATATCATCAAG
CCAGTATGCCGCCCGTTTGTGTTTTTCCACCTATATGCATTTATCCCGAC
GCGCCGTCTCCGCTCCTTTGTCCCCTTTCCTTGTGCGGTGGGATTGGTAA
AACGGAAACGATCACAAAAAGCCCTAGGAACATTCGGCCGGCCTTTGTGC
CGTGCGCCGGCCGTCGCGGGCGGGACTTTGGGGTGTACCTGAGTCTCTTA
ATTGGAGCGGCGGGGGGAACATACAAGATAGATAAAAGAAAGACACGCGA
ATATATCGTAATACACGCCCGGTTGTCCCTAC
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXATTAGAATGTCTTTCATTATTTGTCCATCTATCACTG
TCTACAATGATCAGTATTCTATGTCTCCTCTAAGAGGAGAGAACTATCTC
TTTCCATTTCCTCCTGAATTTTTGAGCTGTGCCCAGAATCTCCTTTAAAA
ATTATTTTCTAGCAATCTTGACTCCTTCACCATGCATCATAAAATTTCTG
TATCCTGAGCCTGTGAATTTATTCCAAAGCTGTTTCTATGTGTTCAGATA
TTTGATATATCAATGTCTCAATTTCTATTGGAACCAACCTCTACCTTACC
TTTTTCAGGATGTAGTAAAAAACCACCATATCCTTGGTGCAATAAAGACA
TCCTCTTCAAGGATCTGAGAACACTCTAGAAGAGAGGGGTGAAAGATGTG
AGAGCCACAAGTTTAAGAGGGGAACTAGGAATCCTATGTGCTATATACTA
TTCAGCCATTATTATTGCCGACCATAAACAGCTGTGGGCAACTATACTAG
CTGTATCTAGGAGTGAGTTTATTAACAGTAAGTTGTGAATAGAAGGACCC
ACAGCATGTATTACTCTTGCTATAACAGGCAGAAAAAAGAGTGTTACTGT
GCTCAGATATGTCTTCTTTGTTGACTTTGTCAATCCCCAATGGATAGTCA
CTATTCCGTCATTACAAACACACCACTGTCCTAAACTATATGGCCCCAAA
AAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_h11.g1 MSMg01no396_h11.g1 CHROMAT_FILE:
MSMg01no396_h11.g1 PHD_FILE: MSMg01no396_h11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:36 2005
         (507 letters)



>mm_chr8_31230947_31231853
          Length = 907

 Score =  980 bits (507), Expect = 0.0
 Identities = 507/507 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   attagaatgtctttcattatttgtccatctatcactgtctacaatgatcagtattctatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagaatgtctttcattatttgtccatctatcactgtctacaatgatcagtattctatg 260

                                                                       
Query: 61  tctcctctaagaggagagaactatctctttccatttcctcctgaatttttgagctgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctcctctaagaggagagaactatctctttccatttcctcctgaatttttgagctgtgcc 320

                                                                       
Query: 121 cagaatctcctttaaaaattattttctagcaatcttgactccttcaccatgcatcataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaatctcctttaaaaattattttctagcaatcttgactccttcaccatgcatcataaa 380

                                                                       
Query: 181 atttctgtatcctgagcctgtgaatttattccaaagctgtttctatgtgttcagatattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttctgtatcctgagcctgtgaatttattccaaagctgtttctatgtgttcagatattt 440

                                                                       
Query: 241 gatatatcaatgtctcaatttctattggaaccaacctctaccttacctttttcaggatgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatatatcaatgtctcaatttctattggaaccaacctctaccttacctttttcaggatgt 500

                                                                       
Query: 301 agtaaaaaaccaccatatccttggtgcaataaagacatcctcttcaaggatctgagaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtaaaaaaccaccatatccttggtgcaataaagacatcctcttcaaggatctgagaaca 560

                                                                       
Query: 361 ctctagaagagaggggtgaaagatgtgagagccacaagtttaagaggggaactaggaatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctagaagagaggggtgaaagatgtgagagccacaagtttaagaggggaactaggaatc 620

                                                                       
Query: 421 ctatgtgctatatactattcagccattattattgccgaccataaacagctgtgggcaact 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctatgtgctatatactattcagccattattattgccgaccataaacagctgtgggcaact 680

                                      
Query: 481 atactagctgtatctaggagtgagttt 507
           |||||||||||||||||||||||||||
Sbjct: 681 atactagctgtatctaggagtgagttt 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)