CTCCTATAAATCGCGGACGNTATTAGAACACTATTCAAAGACACATCCGN
GGAANNCTTCCTATCCCTCACCTCCTGCAGCTCAGGGTCTGAGGCTAAGA
CACAATTATCTCTGGGCCACTTTTCCTGCGAGTTGTCCTTTGAAACCCGT
TGAGTCTGGGAATGTGATTCTGGTGACTCCTTCCAGCTGGAGTCATCTCT
GTCTCCTACATAAGAGCCTATAAGGATTTTCTTAGATAGTAATTCTTGTT
AGTATGGTAACCATGACAACTTGACAATACATTAATTCTGAGAATGTTCA
GATTTACATTATCTAATGTCTTCCTGAAGTGATTATATACAACATGCTAT
TTTCAAATACCCTGTTATTGTCCAGTGCCTAGCTAATATTGTGATTTCTC
CAAGCCTTTCCCCTCCCTCTCCCTCTATGTCCCTGTTATCTCTTCCAGAG
TCCTCTTCCCCATCCCCACTCTGTTTTTCCTCCCATCTTTTCCTCTATAA
TACCTTCTTTTGTCTTGTGAATTAGCACCTTGTTCTCATATTTTTCTTTG
GCCCATTTATACCCTCTTTATCTTTTCCTCCTACTTTTTCCCCGCCTTTT
CCCTCTTTTCCTTACTTTTATTCTCCTCTCTTCTTTCTCCATCCCCTTAT
TCTATCCCTTTCTTTATCTTTCACCCATTTATTTCATTTTCTTTTTCCCT
TCCTTCTTTTTTCCTATCTTTTACATCTCCTTCACTTCTATTTCTTTCC

CCCGATGATTTGTGAGGCCTGGAGGCGCCTGTTTCAAAACTTAGGNGAAC
TATAGAAGTTCAACAAAATTCCCTGTACACATGGAGCTCATTTGGGGCTT
ACCCAGCTGCTGGTCTCAGGATTTTGAGGATGCAAAGATGTTTTAACAAT
ACATGGTGAAATTAAAGACACTTATGCTTTACCACACAGTTTAGTTACAT
TATGAAATGACAGCCCTGGGCATTGGGTGTTAGTACGAGGAAGGCATTAT
TTACAGAAATGGGGGTCACTAGTGTGCTGCAGACAAATGTGAGCCCAGAG
GTAACCTGTCCTTCCTTCTCCCACCTGACACCGCCCTGGTGTGATCACCT
GGAATGATGGAACTACTGTCATGCATGCTCTCACCTAGAAAGGAGACCAT
CCTGCTCTCCCCCATGTTCCTACTGTGACCGTGGAGCTATGGATATTTTC
CGTCCCGTTTACTCCGTACCTCTTTCCTGATTGAAGCCTTCCCCCTATCT
TAGTATATTTACTTTTTTCCCCCATAACTTTCCCCATTTCATTATCCAAG
AAAATCCCTCCTCTTATCTCAACTCCCTTAACTCCCTCCCAACCCTCTTC
TCTAAAAACTTTTTTTCAATTTAACTTACAAACGGCCCTTTTAGCTGTCC
TCTACTTCTTTTTCCTCTCTATTTTCTCTTCCCCATTCCGTTACTTTCCC
CTTCTTCTTCCCATCCTGCCCCTCCCCTACCTCCACTATATCTATCTCTT
TTTCACCCAACACTTCTTTATTC

Query= MSMg01no397_f11.b1 MSMg01no397_f11.b1 CHROMAT_FILE:
MSMg01no397_f11.b1 PHD_FILE: MSMg01no397_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:45 2005
         (176 letters)



>mm_chr8_10157726_10158301
          Length = 576

 Score =  340 bits (176), Expect = 2e-98
 Identities = 176/176 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcagctcagggtctgaggctaagacacaattatctctgggccacttttcctgcgagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcagctcagggtctgaggctaagacacaattatctctgggccacttttcctgcgagtt 260

                                                                       
Query: 61  gtcctttgaaacccgttgagtctgggaatgtgattctggtgactccttccagctggagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctttgaaacccgttgagtctgggaatgtgattctggtgactccttccagctggagtc 320

                                                                   
Query: 121 atctctgtctcctacataagagcctataaggattttcttagatagtaattcttgtt 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctctgtctcctacataagagcctataaggattttcttagatagtaattcttgtt 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 176
Length of database: 576
Length adjustment: 8
Effective length of query: 168
Effective length of database: 568
Effective search space:    95424
Effective search space used:    95424
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no397_f11.g1 MSMg01no397_f11.g1 CHROMAT_FILE:
MSMg01no397_f11.g1 PHD_FILE: MSMg01no397_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:45 2005
         (243 letters)



>mm_chr8_10341554_10342196
          Length = 643

 Score =  420 bits (217), Expect = e-122
 Identities = 235/241 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   cctgtacacatggagctcatttggggcttacccagctgctggtctcaggattttgaggat 61
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 442 cctgtacacatggagctcatttggggctcacccagctgctgttctcaggattttgaggat 383

                                                                       
Query: 62  gcaaagatgttttaacaatacatggtgaaattaaagacacttatgctttaccacacagtt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcaaagatgttttaacaatacatggtgaaattaaagacacttatgctttaccacacagtt 323

                                                                       
Query: 122 tagttacattatgaaatgacagccctgggcattgggtgttagtacgaggaaggcattatt 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |
Sbjct: 322 tagttacattatgaaatgacagccctgggcattgggtgttagtacgaggaaggcagcagt 263

                                                                       
Query: 182 tacagaaatgggggtcactagtgtgctgcagacaaatgtgagcccagaggtaacctgtcc 241
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tacagaaacgggggtcactagtgtgctgcagacaaatgtgagcccagaggtaacctgtcc 203

            
Query: 242 t 242
           |
Sbjct: 202 t 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)