BAC Information

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BAC

Clone NameMSMg01-397I05
Chromosome8 (Build37)
Map Location 84,774,087 - 84,774,333
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384852, Inpp4b, LOC671182
Downstream geneIl15, EG666564, LOC675800, EG666289, Zfp330, Rnf150, LOC100039688, Tbc1d9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397I05.T7 (MSMg01no397_i05.b1)MSMg01-397I05.TJ (MSMg01no397_i05.g1)
ACCAG497835AG497836
length784769
length of high quality
(start - end)
236 (44 - 279)247 (75 - 321)
definitionCHROMAT_FILE: MSMg01no397_i05.b1 PHD_FILE: MSMg01no397_i05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:58 2005CHROMAT_FILE: MSMg01no397_i05.g1 PHD_FILE: MSMg01no397_i05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCCTGACCNATTCCTGACTTTTATCATGAACAGGTGTTGGCTTATGTT
AAATGCTTTCTCGGCCTCTAATGAGATGATCATGTGGAATTTTTCTTTGA
GTTTGTTTATATAGTGGGTTGAGCCATCCCTGTATCCCTGGGATGAAGCC
TACTTGATCATGATGAATGATTGTTTTGATGTGTTCTGGTTTTGGTTTGT
GATATTTTTATTGAGTATTTCTGCGTCTATATTCTCTAAGGGAAATTGGC
CCGAAGTTGCCCTCTTGCTTTTTTTTTTTTTCGCCCCACAAACCCCACAC
CGCGCCCCCGCTTCTTTTCTCCTCTTACTTTCCTCTCCGTTTTCCTTTCT
TCGGTTCTTCTCTCGCTTTCTCCCCCCCTCCTCCTCCCCCCCTTTTTTTT
CTCCCCCTCCTCCTTTCTCCTTTACTCTTCCCCCCTCCCTCTCCTTTTCT
CCTTTCTCTTCTTCTTTTCTCCCCCTCTCCCCTTCTCTCTCTTTCCCTCC
CTCCTTCTTTTGCTCTCCCTCTCCCTCTTTTTTTTCTTCTCTTCCCTCCC
CCTTCTTCCCCTCCTTCTCCTTTCTCTTCTTTCCTTTCCTCCTTCTTTTC
TTCATTCCTTCGCCCCCTTTTCCCCCTTTTCCTTCTCCCTCCTCCCCCTC
TTCCCCATCTATTATCCTTCCTCTCCCTATTTTTCTCCCCACCTTCACTA
ATATCTCTATCGATTCTTCTCACTTCTCTCTACA
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCTCCTAGAACATTAAGGAGGAA
CAGATAAGCATCATTTTTATCTGAAGATAACTAGTAATTGTGAGTGTATT
ATTAAGTATTGTTAAGTCTTATATGTGTATGGGGCATTGGGCTATACACA
GACAGTCTGGTCTCCAGTCAAGCTGAAGTCTGAACTCCGGAGTGGTGATG
ATTCACCTATATGACATGGTAGGCATTCCCTCATGTCTCCTGGACTCGAA
GCTACTGTCAAAGCTACTGCTCTTTTTTCCCCCACCGGAGACGCATGCCC
AGTAGTCTCATAGACCACGCCCCACGCTTCTGACCTTCAGGCCAGACTCC
TCCCCGTTACCTACCCCCCCACCCCTTTTCTGCCCCTCCCACGACGCCCT
GTTTATCCCCCCCCTACCCTCCTCTTCTCTCCCCTCCCTCCCCCCTCTCC
CCCCCCCTCACTCTCCTACTTACCCCCCCCTCCCCTACCCTCCCCCCTTC
CCTTCTCCCCCCTTTTTCCTTTTTTCCTCCTCCCCGCCCTCTCCCTCGTC
CCTTCTTCTTTTTCCCTTCCCCTCCCCTCCCCCCTTCTTTCCCCCCCCCC
CCCCCCACTTCCCCCCTTTTTCTCCCCTCTCCTCCTTCCTTTTCTTCTTC
CTCTCCGTTTCCCCCCCCCCCTCTCCTTTCCTTTCTACCTCCCCCTCTCC
TCTCCTATTCCTCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_i05.g1 MSMg01no397_i05.g1 CHROMAT_FILE:
MSMg01no397_i05.g1 PHD_FILE: MSMg01no397_i05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:58 2005
         (247 letters)



>mm_chr8_84773887_84774533
          Length = 647

 Score =  478 bits (247), Expect = e-139
 Identities = 247/247 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttctcctagaacattaaggaggaacagataagcatcatttttatctgaagataactag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttctcctagaacattaaggaggaacagataagcatcatttttatctgaagataactag 260

                                                                       
Query: 61  taattgtgagtgtattattaagtattgttaagtcttatatgtgtatggggcattgggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattgtgagtgtattattaagtattgttaagtcttatatgtgtatggggcattgggcta 320

                                                                       
Query: 121 tacacagacagtctggtctccagtcaagctgaagtctgaactccggagtggtgatgattc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacagacagtctggtctccagtcaagctgaagtctgaactccggagtggtgatgattc 380

                                                                       
Query: 181 acctatatgacatggtaggcattccctcatgtctcctggactcgaagctactgtcaaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctatatgacatggtaggcattccctcatgtctcctggactcgaagctactgtcaaagc 440

                  
Query: 241 tactgct 247
           |||||||
Sbjct: 441 tactgct 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)