BAC Information

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BAC

Clone NameMSMg01-397I17
Chromosome8 (Build37)
Map Location 45,489,553 - 45,489,811
singlet/doubletsinglet
Overlap genenone
Upstream geneAdam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397I17.T7 (MSMg01no397_i17.b1)MSMg01-397I17.TJ (MSMg01no397_i17.g1)
ACCAG497859AG497860
length867801
length of high quality
(start - end)
72 (168 - 239)261 (75 - 335)
definitionCHROMAT_FILE: MSMg01no397_i17.b1 PHD_FILE: MSMg01no397_i17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005CHROMAT_FILE: MSMg01no397_i17.g1 PHD_FILE: MSMg01no397_i17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCTATACGATCACAAATGCCGCACTGCGCGGAATCTTTGG
ATTTTCANAAGCTAGATTTCCATTACATATCCAGAATTATGTATGTGTAT
GTGTGTGGGGCGCGCAGGTCTTTGGTTCTTCACTTTGAGAATCTAGTGAT
TATGAGAGCAATATTTTTAAAGTCATAATCACCAGAGTGAGAAGTTCATT
GCCACTGTCATGTCCAGGAACTCCTCACAGTATTCCCCATTTTTTTTCTC
CACTCCCTTTAAGCTAATGAATAATTCAGCGTTCCTATGATTAGACCCAA
CGCACTTCTCGCTGGGCTTGCCCACCCCCAAGGCGAGNANGCGAGGATTT
TTTTCCCCCCCCCCCATTATAATCTGCTTTTGCCCATCCCCTTGATTTTT
GTTGCCCCCCCCCCCCCTTATTTTTTTCCCTCTGTTGAAAATTCTCATCT
GTTGTTTCTTTCTCGCTCCACCCAATTCTTTTTCCCTCCTACCCCCGCAT
CTCTCTCCCGTTTCATTCCTTTCCCATAATATCCTACATTTCCACCCCTC
CCTCTCTGTTTCTTCTCCTCATCCCTCCCCTCCTATTCCACGATCGTGGA
TGTCTCTTTACTCATACGCCTTACACCCTTCTGTTCCCGCTTCCCTCTGT
TACCCCCCCTTTCTCTCCTACCTGTAGCTCTGGCCCGCGCCCCCCTTTTT
CTTTCTTTTTTGCCCGCTTCCCTCTTTTACACCGCGTTACTATGTCTCGC
GACACCGGCTTCTTCTCTCGCCCTCACCTTTCATTACCCCTAACTTTCCC
ATTATACTCCCGCTCCCCTCATGCACCTTTATTATTTTATCCATTCACTC
TCCCTTCTTCATCTTTC
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCTGGGGAGACCACTGGGAGGGGAG
CAATATTTAGGATATAAATAAATAATCAATTATTAATAAAAATGGTTAAA
AATAAAAATATCTTACTCTACATACTTGGGACCTGAATATCTGAATATCT
GTATGTAGCTGGAATAAGGACTTTTAATTGACTATAAGTAGTGCTTGAAT
GGTCATGTTTTATGGGTACCCCAAACAGTTGTAAGGCTGATAGATGACTT
AGGAATATTTACTTTTTAATTTTTTATTTGTTTGNGTGNGNGNGNGNGNN
NNNNNNNNNTNTTTTCTCCTCCCTTCCTCTTCCTCTTTTTCTCTTTCTTT
TCCCCCCCCTCTTCCCCCCCCCCCCCCTTTCTTTTCCTCTTCTTTTCCCC
CTTTCCTCTCTCTCTTTTTTCCTTNTTCCTTCTTTTCCCTTTTTTCTCCT
TCCCTCTCCCTTTTCTTTCCCCCCCCCCTTCTTCTCCCTTTTCTTTCTCC
TCTCTCCCTCTCCTCCTTCTCGTCTTTGTCTCGGTCTTTTTTTGTGTTCT
TTCTTCCCTCCGCTCTCCTCTTCCCTTTCTTTTTCTTTCTCTCCCTTCCC
TTCCCTCTTTTTTTTTTTTCTCCCCCCCCTTGTCGTTCTCTCCTTTCTCT
CTCCCCGTTCTCCGTCCTCTCCTGCCCTTTTCTTGCTCTTTCTCGCCCGC
CCTTTCTCCCTCTTTTTTTCTTCGCCTCCCTTCTTTTTTATTTCCGCTNT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_i17.g1 MSMg01no397_i17.g1 CHROMAT_FILE:
MSMg01no397_i17.g1 PHD_FILE: MSMg01no397_i17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:00 2005
         (261 letters)



>mm_chr8_45489266_45489926
          Length = 661

 Score =  449 bits (232), Expect = e-130
 Identities = 254/262 (96%), Gaps = 5/262 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctggggagaccactgggaggggagcaatatttaggatat--aaataaataatcaatta 58
           ||||||||||||||||||||||||||||||||||| || ||  |||||||||||||||||
Sbjct: 546 ttctggggagaccactgggaggggagcaatattta-ga-atgcaaataaataatcaatta 489

                                                                       
Query: 59  ttaataaaaatggttaaaaataaaaatatcttactctacatacttgggacctgaatatct 118
           ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 488 ttaat-aaaatggttaaaaataaaaatctcttactctacatacttgggacttgaatatct 430

                                                                       
Query: 119 gaatatctgtatgtagctggaataaggacttttaattgactataagtagtgcttgaatgg 178
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gaatatctgaatgtagctggaataaggacttttaattgactataagtagtgcttgaatgg 370

                                                                       
Query: 179 tcatgttttatgggtaccccaaacagttgtaaggctgatagatgacttaggaatatttac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcatgttttatgggtaccccaaacagttgtaaggctgatagatgacttaggaatatttac 310

                                 
Query: 239 tttttaattttttatttgtttg 260
           ||||||||||||||||||||||
Sbjct: 309 tttttaattttttatttgtttg 288


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 661
Length adjustment: 9
Effective length of query: 252
Effective length of database: 652
Effective search space:   164304
Effective search space used:   164304
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)