BAC Information

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BAC

Clone NameMSMg01-398D21
Chromosome8 (Build37)
Map Location 3,442,475 - 3,443,026
singlet/doubletsinglet
Overlap geneArhgef18
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik
Downstream genePex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398D21.T7 (MSMg01no398_d21.b1)MSMg01-398D21.TJ (MSMg01no398_d21.g1)
ACCAG498392AG498393
length753754
length of high quality
(start - end)
556 (48 - 603)246 (78 - 323)
definitionCHROMAT_FILE: MSMg01no398_d21.b1 PHD_FILE: MSMg01no398_d21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:55 2005CHROMAT_FILE: MSMg01no398_d21.g1 PHD_FILE: MSMg01no398_d21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCAAGTGTTTCAAGATCAACATACCAACCCTGGCAGTGCTTAC
ACTCTGAGCCTGAGGGGACAGATCAGCAGATGGGGTCTTCTGCTGCAAGG
GATCCCTTTTCTGCCCTATAAAACACTAAGTCCCCCGTCTTGGCACAACC
TCCACTCCTGCAGAGACTGCGATCCTTCACTTTGATTAAAGGGTAACCTG
CTTTGGTAGAGGATTGTCTTTATTTATATATCACCTCTTTCTATCGCTTC
TGCTGACAACCTAAGAGGGGCTGGGGCACCCACCCAGCTCTTTCCTTTGG
CCCACCTTTCCTCACTCTCTTCACCCATCTCCCTCCTTTCTCTGACACAC
ATTCATGGAGGGCATGACCACTGACCAGGCTTACTCAGGGACTAAACAGT
TGCCTGCTCAGACACAGAACCTCTAGGTCTTGGTGTCTTTACTTCTTTGT
CAATGTAAATGGTGCAAATCCCAAATGGTTCTTGTAAGTGTGCCACATAA
GCTCAGTTTAGCTCCTTCTCTTCAGCTCCCCTGCCCAATCCCTTCTCCTC
CCGCCCGCCCCTCTTCCCCCTGTCCCCTTCACCCCCATCCCCTTTCTCCT
CTCGTCTCGCCCCTCTCTCTCTGTCACCTTCACCCCATTCCCCTTCTCCT
CCCGACCGGCCCTCTTTTCCCTGGTCCCTTTTACCCCCAGCCCCTTCTTT
TAN
NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGATAGTTCAACAGGTAAA
AGTCCTTCCCCAAACCTAACAAAGTTAGGTTGAAGTTCAATTCCTGGGAC
TCAAATAGTACAAAGAAAATAACATCCTCTGAACTACACACACACACACA
CACACACACACACACACACACACACACACACACACACACCACAGAGACAC
AGCTTCTTAGGAGGCTAAGGTAGAAGAAACAGATAGTTTGAGCCTGGCAA
AATAATGAAACCCTATCTCCAAATTTTTGAAGCTGGAGAGCTGGCTCAGT
GGATGAAGTGCTGCCTTGCAAGCCTGAAGGCTGAATGAACTCCGTGCCTT
GGTAGTGAGCACTTATAATTTCCGCACAAGGAAGGTGGAGATAGGAGCCT
CCCTGGGGATCAATGGCTAGCCAGACAGACTACCATGGTCCAGACCAGTG
AGGACCCTGTCTAAAACAACAGGGTGTCTGAGGGACAGCACCCAAGGTTG
CTGTCTGACCTCCACATGGATGTGCACATGTGTAAATGCACCCCCATACA
CATCATATACCGGTATGTCCATACACATGAACACCCAGAGAGACACCCCC
CCTATTCTTGCTTATATTCTTGAACACACCCCCCCCATGGCTGGAAATTC
TTTGCTGGGGAAGGAACTCCCGAAAAAACCCATGCTTATGAAAATTCTTT
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_d21.b1 MSMg01no398_d21.b1 CHROMAT_FILE:
MSMg01no398_d21.b1 PHD_FILE: MSMg01no398_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:55 2005
         (556 letters)



>mm_chr8_3442271_3443226
          Length = 956

 Score = 1023 bits (529), Expect = 0.0
 Identities = 547/553 (98%), Gaps = 2/553 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcaagtg-tttcaagatcaacataccaaccctggcagtgcttacactctgagcc 63
           ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 gaattctcaagtgcttt-aagatcaacataccaaccctggcagtgcttacactctgagcc 698

                                                                       
Query: 64  tgaggggacagatcagcagatggggtcttctgctgcaagggatcccttttctgccctata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgaggggacagatcagcagatggggtcttctgctgcaagggatcccttttctgccctata 638

                                                                       
Query: 124 aaacactaagtcccccgtcttggcacaacctccactcctgcagagactgcgatccttcac 183
           |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 637 aaacactaagtcccccatcttggcacaacctccactcctgcagagactgctatccttcac 578

                                                                       
Query: 184 tttgattaaagggtaacctgctttggtagaggattgtctttatttatatatcacctcttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tttgattaaagggtaacctgctttggtagaggattgtctttatttatatatcacctcttt 518

                                                                       
Query: 244 ctatcgcttctgctgacaacctaagaggggctggggcacccacccagctctttcctttgg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctatcgcttctgctgacaacctaagaggggctggggcacccacccagctctttcctttgg 458

                                                                       
Query: 304 cccacctttcctcactctcttcacccatctccctcctttctctgacacacattcatggag 363
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 457 cccacctttcctcactcccttcacccatctccctcctttctctgacacacatccatggag 398

                                                                       
Query: 364 ggcatgaccactgaccaggcttactcagggactaaacagttgcctgctcagacacagaac 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggcatgaccactgaccaggcttactcagggactaaacagttgcctgctcagacacagaac 338

                                                                       
Query: 424 ctctaggtcttggtgtctttacttctttgtcaatgtaaatggtgcaaatcccaaatggtt 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 ctctaggtcttggtgtctttacttctttgtcaatgtaaatggtgcaaatcccaaatggtt 278

                                                                       
Query: 484 cttgtaagtgtgccacataagctcagtttagctccttctcttcagctcccctgcccaatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cttgtaagtgtgccacataagctcagtttagctccttctcttcagctcccctgcccaatc 218

                        
Query: 544 ccttctcctcccg 556
           |||||||||||||
Sbjct: 217 ccttctcctcccg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 956
Length adjustment: 10
Effective length of query: 546
Effective length of database: 946
Effective search space:   516516
Effective search space used:   516516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)