BAC Information

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BAC

Clone NameMSMg01-398N01
Chromosome8 (Build37)
Map Location 18,211,278 - 18,211,911
singlet/doubletsinglet
Overlap geneLOC100040466
Upstream geneCsmd1, LOC665638
Downstream geneMcph1, Angpt2, Agpat5, LOC100040486, Xkr5, Defb40, Defb37, Defb38, Defb39, Defb12, Defb34, EG546038, Spag11, Defb14, Defb4, EG654452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398N01.T7 (MSMg01no398_n01.b1)MSMg01-398N01.TJ (MSMg01no398_n01.g1)
ACCAG498829AG498830
length767799
length of high quality
(start - end)
623 (45 - 667)339 (74 - 412)
definitionCHROMAT_FILE: MSMg01no398_n01.b1 PHD_FILE: MSMg01no398_n01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:40 2005CHROMAT_FILE: MSMg01no398_n01.g1 PHD_FILE: MSMg01no398_n01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGCACTATTCAGTCAACTTGGCAGAAGATCCCTAGCACTAGAAGA
GAATGATGGTCACAAGGGTGCCTGGTTTCAGGTAATCCACCTGCATCTTG
CCTACATTCTAATAGATAGAAATCAAGCCCACTGAGTTGAATCATTTCAA
GTCACAGGCCTAAGGGCAAAAAAAGTACAAAAACGATGTATCTTTACTTG
AAAACAAAAAAACAGTCCAAGAAGTATCCCATGGTCAGAGCCAAGGTCAC
TGTGTTAACAGATATGAAAAGCTGAGGATCTTTGGTCCCAGAAGGGTAAA
AGTGGTCAGTGTTGGTGCATGACTTTAATCCCAGTTCTCGGGAGGGAAAG
GTAGGTAGATTACTGAGTTCGAAGCCAGCCTGGTCTACAGTCTGAGTTCC
CAGACAGCCAGGGCTACACAGAAAAATCCTGTCTAAAAAAAAGAAAAAGA
AAAGAAGAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGA
AAAGAAAAGAAAAGAAAAGAAGAGAAAGGAAAAAGAGGAGGAGGAGGAGT
GTAAAATTTGACCTTTCATACTTACAGACTTACACTCCAGTCCCCAGCTG
TCCCCTGATCCTTCAAATGCTTCTTCCCAGGCTGGTTCCCTGCATGGTAA
CTCCCACTCACCTCTCTGCCATCTTAGAACTCACTCTCTCAGCTCTCCTA
TTTACCAAGCCCCATGG
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTATGTAGAGCAGGCTGGACTTGAAC
TCACAGAGATCCATCTGCTTTTGCTTCCTAAATGCTGGAATTAAAGACAT
GTGTCAGGCTGGCGAGATGGGTCAGCCGTTAAGAGCACTGACTGTTCTTC
TGAGGGTCCTGAGTTCAAATCCCAACAACCACATGGTAGCTCACAACCAC
CAGTAATGAGATCTGACACCCTCTTCTGGTGCGTCTGAAGTCAGCTATAG
AGTAGTTATGTTTAATGATAAATACATTTTTTGGGCTGGAGATAGCGGGG
AGATGCAAATATATATATATGTATATGTATTAAGTTATAGAAGCTTGTAA
TTACTGCCGATTCCCGGCATTGGATAGTGTAAACACTCAGATACTCCCCA
GGAAGAGTTGCTTCCTGTGGCTCATAAAAAGGCTCAGGTGTTATAAATAT
CTAGTTATGAAGATTATGTTTAAAGTGACTTTGATATACCTTGTCCTTGT
TATAATATGCCTTGTCTCTATTTATACATACACCTGTGATGCTTTCTTTG
CTCTTTTTTCCATCGTTACTCCTCGCTTCCTTTTTCTATTTATTCTGTCG
ATATCTTCTTTTTTTCTCTTTCACGCCTCCTTTTTCACCCCTTTACTCCT
CCCTTCCCTCCTCCCACTTATTTTCTAATATCTCCTCCCCTTCTTATCCC
TTTTTCCTCTTTCCCCTTCTCGCCCCTCCATTCTTCTTCCCTTCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_n01.b1 MSMg01no398_n01.b1 CHROMAT_FILE:
MSMg01no398_n01.b1 PHD_FILE: MSMg01no398_n01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:40 2005
         (623 letters)



>mm_chr8_18211074_18212096
          Length = 1023

 Score = 1129 bits (584), Expect = 0.0
 Identities = 615/634 (97%), Gaps = 15/634 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggcactattcagtcaacttggcagaagatccctagcactagaagagaatgatg 64
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcactaaacagtcaacttggcagaagatccctagcactagaagagaatgatg 264

                                                                       
Query: 65  gtcacaagggtgcctggtttcaggtaatccacctgcatcttgcctacattctaatagata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcacaagggtgcctggtttcaggtaatccacctgcatcttgcctacattctaatagata 324

                                                                       
Query: 125 gaaatcaagcccactgagttgaatcatttcaagtcacaggcctaagggcaaaaaaagtac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaatcaagcccactgagttgaatcatttcaagtcacaggcctaagggcaaaaaaagtac 384

                                                                       
Query: 185 aaaaacgatgtatctttacttgaaaacaaaaaaacagtccaagaagtatcccatggtcag 244
           |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaatgcgatgtatctttacttgaaaacaaaaaaacagtccaagaagtatcccatggtcag 444

                                                                       
Query: 245 agccaaggtcactgtgttaacagatatgaaaagctgaggatctttggtcccagaagggta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agccaaggtcactgtgttaacagatatgaaaagctgaggatctttggtcccagaagggta 504

                                                                       
Query: 305 aaagtggtcagtgttggtgcatgactttaatcccagttctcgggagggaaaggtaggtag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaagtggtcagtgttggtgcatgactttaatcccagttctcgggagggaaaggtaggtag 564

                                                                       
Query: 365 attactgagttcgaagccagcctggtctacagtctgagttcccagacagccagggctaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 attactgagttcgaagccagcctggtctacagtctgagttcccagacagccagggctaca 624

                                                                       
Query: 425 cagaaaaatcctgtctaaaaaaaagaaaaagaaaagaagagaaaagaaaagaaaagaaaa 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cagaaaaatcctgtctaaaaaaaagaaaaagaaaagaagagaaaagaaaagaaaagaaaa 684

                                                                       
Query: 485 gaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaa------------gagaa 532
           |||||||||||||||||||||||||||||||||||||||||||            |||||
Sbjct: 685 gaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagagaa 744

                                                                       
Query: 533 aggaaaaagaggaggaggaggag---tgtaaaatttgacctttcatacttacagacttac 589
           |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||
Sbjct: 745 aggaaaaagaggaggaggaggaggagtgtaaaatttgacctttcatacttacagacttac 804

                                             
Query: 590 actccagtccccagctgtcccctgatccttcaaa 623
           ||||||||||||||||||||||||||||||||||
Sbjct: 805 actccagtccccagctgtcccctgatccttcaaa 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 81
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space:   620969
Effective search space used:   620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)