BAC Information

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BAC

Clone NameMSMg01-399F05
Chromosome8 (Build37)
Map Location 108,892,366 - 108,892,467
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Downstream geneZfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399F05.T7 (MSMg01no399_f05.b1)MSMg01-399F05.TJ (MSMg01no399_f05.g1)
ACCAG499215AG499216
length718785
length of high quality
(start - end)
167 (74 - 240)105 (84 - 188)
definitionCHROMAT_FILE: MSMg01no399_f05.b1 PHD_FILE: MSMg01no399_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:19 2005CHROMAT_FILE: MSMg01no399_f05.g1 PHD_FILE: MSMg01no399_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGTATAGCTAGAGCCACATAGAGAGACCCTATCTCAAAACACTA
CAACAAAGGAAGCAGTTTCCATAATCTCTGCTTCGAGTTTCTAACTTTTC
TTTTCTTTCTTTCTTTTTTTTTTTTTTTTGGCTTTTCGAGACAGGGTTTC
TCTGTGTAGCCCTGGCTATCCTGGAACTCACTCTGTAGACCAGGCTGGCC
TCGAAATCAGAAATCCGTCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAG
GCAGCTGTCTCTACCTTTTCTAATGGGAAAGGAAACTAGAATAATAGTTC
TACATGATTTGCATGGCATGGTGCACATGGGAGTCCTGGGAACTGAATTC
ATGATTTACCTGCACCTGCTGAATAATCCTGCCAGACCTCGGAAGATATT
TTAACATTTTCAGTTATATTATATCGACCACCTTCCATTGTTAATCTTCA
GTGTTATCAGAGGTGGTGATAACTCCATTTGGAGTGGAGTAAGAATTAGG
TTTAAGGGGCCATATGTGGGCGCCGTTATTTTTTCAAGAAGAACCTGGTT
TATGTTATTTGCTGATTCGTGCCTAGAGCCCCACGGAATCCTAGTTCCTG
AATTAATCTTTAGCAGAACCCTTGATATTTTTTTTCTGCCTTCGGCAATG
TGGGTCTTTTTTTGTAAA
TCTCCTTCGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTATGTTCAAGAGGATG
AGGAGAAGCTTCAGAGAGCAGGTTCCTTCCTGAGCAGGACAGCTTGGAGG
GTGAGGCACATTCCCCTGGAGACTGGCATGTGCAGAATGGGCGGTTGCAC
CATGGAGACGCCCCTGCCTCAGGCCATCCTGTGTGTGAAGCAATGGAGAC
GTTTCTGTGGGCATGAGCATTCCAGGGTGGTCAGGGACCTGCTCTGATCC
CCGTGCCTCTCTGGGTGCTTGTCTCTCTTACCTTTGAAGCTGAATGCCAT
CTGTTATTTTTCCCCGTCATCTGTCTCTGATCATGGCTCGCCAAACATGT
CATACCCTTAATTTTTTCTTTTCCCCCCCTCTTATTAACTCTTACCGACT
GTCGTTCTGTAAACTTGTCTATTTCCTACCCCTTTCCCTTTTTGGTGATC
AATCTTGATGATCTGATACTTCTTCGTTACCCTGTTTTCCGTTTTTTTTT
TTTCCCCCTTTCTATCCCCCTCACCCTTTTTTTGATTCAGCGGTCGTGCC
CCTTTTATTTCCTTCTTCACTCCTCGTCATCCTACTCTGTTATCTGCCCC
TTCCGCTCTGTCTTTTTTCTTCGTCCCCTACTTCCTTCTTCCCCCTTCGC
TTCTTTTTGCTTTCCTTTCTACACCTATCATCCTCTTCTTATATCCTTCC
TTTTGCCTCCCTTGCCCTCCCCCAGCTCTTACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_f05.g1 MSMg01no399_f05.g1 CHROMAT_FILE:
MSMg01no399_f05.g1 PHD_FILE: MSMg01no399_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:19 2005
         (105 letters)



>mm_chr8_108892166_108892670
          Length = 505

 Score =  197 bits (102), Expect = 1e-55
 Identities = 102/102 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttatgttcaagaggatgaggagaagcttcagagagcaggttccttcctgagcaggacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ttatgttcaagaggatgaggagaagcttcagagagcaggttccttcctgagcaggacagc 243

                                                     
Query: 61  ttggagggtgaggcacattcccctggagactggcatgtgcag 102
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttggagggtgaggcacattcccctggagactggcatgtgcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 105
Length of database: 505
Length adjustment: 8
Effective length of query: 97
Effective length of database: 497
Effective search space:    48209
Effective search space used:    48209
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)