Query= MSMg01no399_g01.b1 MSMg01no399_g01.b1 CHROMAT_FILE:
MSMg01no399_g01.b1 PHD_FILE: MSMg01no399_g01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:22 2005
(382 letters)
>mm_chr8_48569812_48570598
Length = 787
Score = 545 bits (282), Expect = e-159
Identities = 339/362 (93%), Gaps = 9/362 (2%)
Strand = Plus / Minus
Query: 23 cagagacagattggtaactcatgcaagctggggtctgaagcacatgtaaagatgtgtaaa 82
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cagagacagattggtaactcgtgcaagctggggtctgaagcacatgtaaagatgtgtaaa 475
Query: 83 ataaacagagtgagggataacattccagctgatgagaaggagtgcagacatccacctcct 142
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 474 ataaacagagtgagggagaacattccaactgatgagaaggagtgcagacatccaccccct 415
Query: 143 ccatctcca----cgccccc-ccagcacccaggcatgccagggcttccagtgccagacgc 197
||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 414 ccatctccacccccaccccctccagcacccaggcatgccagggcttccagtgccagacgc 355
Query: 198 cccacggttgatgaaagccaaggtttcctcccccagagattctcggtccttaataagcca 257
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 354 cccacggttgataaaagccaaggtttcctcccccagagattctcagtccttaataagcca 295
Query: 258 gttggtcggggaaactaatattcatctaaaacccagagctctggcagcctttgtggtccc 317
||||||| |||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct: 294 gttggtcagggaaactaaaactcacctaaaacccagagctctggcagcctttgtggtccc 235
Query: 318 caaccctacctgcacccacccacccacccaccctccttgtccccctacaccacagctaaa 377
|| ||| |||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 234 cacccccacctgcacccacccaccctccc----tccttgtccccctacaccacagctaaa 179
Query: 378 gg 379
||
Sbjct: 178 gg 177
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 787
Length adjustment: 9
Effective length of query: 373
Effective length of database: 778
Effective search space: 290194
Effective search space used: 290194
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no399_g01.g1 MSMg01no399_g01.g1 CHROMAT_FILE:
MSMg01no399_g01.g1 PHD_FILE: MSMg01no399_g01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:23 2005
(282 letters)
>mm_chr8_48387140_48387821
Length = 682
Score = 489 bits (253), Expect = e-143
Identities = 271/277 (97%)
Strand = Plus / Plus
Query: 5 ggcttggggttgctcagcagtaagaattcaataccaaagacatgagatcgtatcccggac 64
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 205 ggcttggggttgctcagcagtaagaatgcaataccaaagacatgagatcgtatccccgac 264
Query: 65 acccatgtaaaatcctggcatggctgctaacctcagcactgcactgtgggggacacagac 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acccatgtaaaatcctggcatggctgctaacctcagcactgcactgtgggggacacagac 324
Query: 125 aagaggctcactaggacttgctgactgtcagcctgggtgaaaaacagctcactcctattc 184
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 aagaggctcactaggacttgctgactgtcagcctgggtgaaaaacagcttactcctattc 384
Query: 185 tcctattatcaataacatccatggagatcacttgaacagcttgtttgaaacttctccccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcctattatcaataacatccatggagatcacttgaacagcttgtttgaaacttctccccc 444
Query: 245 acgtttaacagcttatttatactaagcttctgaagtc 281
||||||||||||||| |||| |||||||||||||||
Sbjct: 445 acgtttaacagcttaagtatattaagcttctgaagtc 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
