BAC Information

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BAC

Clone NameMSMg01-399K17
Chromosome8 (Build37)
Map Location 91,595,727 - 91,596,073
singlet/doubletsinglet
Overlap genenone
Upstream gene5033428A16Rik, Heatr3, Papd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089
Downstream geneEG625801, EG384862
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399K17.T7 (MSMg01no399_k17.b1)MSMg01-399K17.TJ (MSMg01no399_k17.g1)
ACCAG499477AG499478
length729739
length of high quality
(start - end)
347 (74 - 420)61 (74 - 134)
definitionCHROMAT_FILE: MSMg01no399_k17.b1 PHD_FILE: MSMg01no399_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005CHROMAT_FILE: MSMg01no399_k17.g1 PHD_FILE: MSMg01no399_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAAATCCGCGG
AATTCTTCACCCTTTGCCGAATGGTCCACTGGTTAAAATGTATTTTTCTA
ATTTTCTGGGCGAAACTACACTTTGGTCCTTTCTGGGATTTTCTCCTGTC
TGGATGGTGGTTGGCTATGAGTAACGGAATCTGGTGGAGCCAAGTCACAT
GGGACAGCCACAGCCTGCCACAGTCTGCTAGTGTGCCCCCTCTAGAGCCA
GAATTTGCTTGGCCTTGAGTGAAGCCTGGAAGGCCATGGTGAAGACCACA
GAGAGCCCTAGAGGAGGCTGTCCTGAAGTCTGGTTATCTATCCTCTCCCT
GGGCATAAGCATCACCTACACCTGCAGGCTGAGAGGAACCCTCATCTTGA
CTCTGGCAAGCAGCCGCTCCCCCCACCGTCACATCTTCCTTCTGTGCCAG
TCAGTGTCTGAAGGACACACCATAAGCAGTCTATGGTCTATAGGCTGATG
GTTTGGCACAATAGTGCATGCCGGCTTCCTCTGTGTTATCTCTAAAATAA
CATTCATCCGACCTCTGTGTGTCACCTTAAAGTGTGGCCTGCAATTCAGC
AGATGTTCACATCTGTGATCCCTACACTCTGGAGACTACCGTAGTTTTCC
GAGACCTTATCTACCGTTTGTGCCACTTACCACATATTCATCTATTTGTC
CGTCCGCCTGCTTGTTCGCTTGTTTTAAG
AATGCAGCGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATATACACCGGAGATTGCTTATCGAT
CCCCATCAGAATATGCGGCTGGCCCCGGGGACGGCTGGGATTTTCTCAGG
GAGCTAATATCGCGGTATCCGAGCTGTCTTGTCCAATTCACTGACTCCAG
GCCTCTAATCAGCACCGAGTTTCTTATTCTGAGAATTCTTGCCACTTGTG
TGTGCTGCTCCCCTTCCACTCTGCTGTACTCTGCCAGCGATCGAAATGCC
AGCCCACGTATGGCGAGGCTCACCCCATTGTTTACTATTGACCCACCTCA
CTACGCATTGATTGTCCAATCCCTACTGTTGTGCCCCCAAAAAGTCTTAC
TAATAATTCCCGGTCTGCACACGCAATCTACCTTCCCCTTCCCCGACTTA
TCTTATCCCTGCATTTATGGCTACAAAACAATTATCAGGTTGCGTTTCCG
CGACCCCTTGCTTGCTACCTCGAGCGCCTCCCCGTTTGACATACCCCACG
TGCCTCTGTTTTCATTTTCCCCGTTGACTCGCTTTTTTCCGCTGTCTAAC
TTTATCTCTCCCCGCACTTTGTTTTAAGCCTTATGCCCCTCTTGCATTTG
CTCCTCCCTAGTTCTCGCCCCGATGTCCTTTTCCTGTATAGCCCACCCAC
GCCCACCTCTGTTCCCCTTTTTTTCCCCCCCCCCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_k17.b1 MSMg01no399_k17.b1 CHROMAT_FILE:
MSMg01no399_k17.b1 PHD_FILE: MSMg01no399_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:45 2005
         (347 letters)



>mm_chr8_91595527_91596273
          Length = 747

 Score =  663 bits (343), Expect = 0.0
 Identities = 346/347 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccactggttaaaatgtatttttctaattttctgggcgaaactacactttggtcctttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtccactggttaaaatgtatttttctaattttctgggcgaaactacactttggtcctttc 488

                                                                       
Query: 61  tgggattttctcctgtctggatggtggttggctatgagtaacggaatctggtggagccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgggattttctcctgtctggatggtggttggctatgagtaacggaatctggtggagccaa 428

                                                                       
Query: 121 gtcacatgggacagccacagcctgccacagtctgctagtgtgccccctctagagccagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gtcacatgggacagccacagcctgccacagtctgctagtgtgccccctctagagccagaa 368

                                                                       
Query: 181 tttgcttggccttgagtgaagcctggaaggccatggtgaagaccacagagagccctagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tttgcttggccttgagtgaagcctggaaggccatggtgaagaccacagagagccctagag 308

                                                                       
Query: 241 gaggctgtcctgaagtctggttatctatcctctccctgggcataagcatcacctacacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 307 gaggctgtcctgaagtctggttatctatcctctccctgggcataagcatcacccacacct 248

                                                          
Query: 301 gcaggctgagaggaaccctcatcttgactctggcaagcagccgctcc 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gcaggctgagaggaaccctcatcttgactctggcaagcagccgctcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)