BAC Information

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BAC

Clone NameMSMg01-399N03
Chromosome8 (Build37)
Map Location 41,174,395 - 41,175,032
singlet/doubletsinglet
Overlap genenone
Upstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
Downstream geneFgf20, 2900075B16Rik, Zdhhc2, Cnot7, Vps37a, Mtmr7, LOC100039179, Adam24, LOC667019, LOC100039170, LOC436137, Adam25, EG667041, LOC667052, LOC384806, Adam39, LOC384808, EG667077, Slc7a2, Pdgfrl, Mtus1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-399N03.T7 (MSMg01no399_n03.b1)MSMg01-399N03.TJ (MSMg01no399_n03.g1)
ACCAG499591AG499592
length718796
length of high quality
(start - end)
641 (45 - 685)329 (85 - 413)
definitionCHROMAT_FILE: MSMg01no399_n03.b1 PHD_FILE: MSMg01no399_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:56 2005CHROMAT_FILE: MSMg01no399_n03.g1 PHD_FILE: MSMg01no399_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:12:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTTCTTCATCTCCCTCCCTGACTACTAGGACCCTTCCTCACAACA
AGTCAGCCTCCTACATATACATCTTTTTTTTTTTATGTGGGCCATAGAGT
TTGATTATATATATATGGAGGAGAATGAAGCAGAGACGACTACTTTTTTG
TGGATGGTCTCTCACTGTACCTGGACTTAGATGCTCATGCTTGCATGTTA
GATATTTCACCAGTCTCAAAAAGTAGCATTGGGAGTATATCAGAAGTGAG
ACCTCATAAACAATCCTCTTAAATTCTCTCAAACTAAGACATCAGTGCAT
CAAAGACAAAGCAGTGCCCACTTCTATAATCACATAATTGCTACAAAACC
CTGTTGATAATTGACTCCATTTATACCACACTATTACTAGGCAGATTGCA
CATCCATGTATTACATAGCTTTTTGTTGCTATAGAGAAATGATTTTTAAA
TGATTCAAGGAACAGAAGATTTATTTTGACTCATAGTCTTAGAAATGTGG
CCTCATGATCATCTCGCCCGCAGCTCTATTGTCTTTAGACACGTGCCAAA
TCAGAAGTGTTATGGCAGAAGGGTATGGCAAAAGGAAACTGCACGTTCCA
AGACAGCAGAGATGTGAAGCTAGGAAACGCCCAGCCTGAGGGAAAATCCC
TCACAGTCACATCTTGGG
TATCCTTCAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTGAGATCCTGCTA
GGTGTGACCACTGGGAATTCTGGGTAATTGTGTTTCTAGGCATTGGAAGC
TGATGCTTAGGAATGGGGATGGACTAGGAATTGGATACTTAGGGGGTCCA
CAAGGGGGGGAGAGCAAGGTGTTCCACTAAAATCGGCTTAGTCCCCTGGG
AGTTGGGGCTGGGATAAGAGGATGAGTAGGACGAAAGGTTGGAGAACTGT
GTGATCCACTGGAGAGGGGAGCGGAAAGGACGAGGAGGTCATGGAAGGCG
GGGTATTACAGAGCGAGGATGGGTTGGGGTGAGACTCTGGAGGAGGCCAT
GGAAGGTGGCGTATTACAGAGTGACCCTGGTTTGGGGTGGGATACTGATA
CGATTTTGAGAGGTATATGCTTTTTTGACGTCCCTTTTCCCTTTTCTATT
TTCATTCTAGTTTTCTTTTTTTTTTTTCTTCCCCTTGTTCGCGCTTTTTT
TCTTTCCCCTGTCTTCTCACGTCCCCTTTTTTTTTCGTTTCTCCGTTCTA
CCCCCTCTTCTCTTTTTTTTGTCACCGGCTCTCTTTCTTCTTTTTTTCTA
CTCTTCTTCTTCTTTTTTTCTTTTCCCCCGCTTCTTCTTTTCTTCCCCCT
TCTTATCTTTATTGTTCTGCTTTCCTTCGTCTTTCGTTCTCCGTCCTTCT
GTTCTTTACCTTTCCTTTCTATGCCCGATTCCCATGTCTTCTCGCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no399_n03.b1 MSMg01no399_n03.b1 CHROMAT_FILE:
MSMg01no399_n03.b1 PHD_FILE: MSMg01no399_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:12:56 2005
         (641 letters)



>mm_chr8_41174191_41175232
          Length = 1042

 Score = 1197 bits (619), Expect = 0.0
 Identities = 634/639 (99%), Gaps = 3/639 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctttc-ttcatctccctccctgac-tactaggacccttcctcacaacaagtcag 62
           ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcctttcatttatctccctccctgacatactaggacccttcctcacaacaagtcag 264

                                                                       
Query: 63  cctcctacatatacatctttttttttttatgtgggccatagagtttgattatatatatat 122
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 265 cctcctacatatacatctttttttttt-atgtgggccatagagtttgattatatatatat 323

                                                                       
Query: 123 ggaggagaatgaagcagagacgactacttttttgtggatggtctctcactgtacctggac 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggaggagaatgaagcagagacgactacttttttgtggatggtctctcactgtacctggac 383

                                                                       
Query: 183 ttagatgctcatgcttgcatgttagatatttcaccagtctcaaaaagtagcattgggagt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttagatgctcatgcttgcatgttagatatttcaccagtctcaaaaagtagcattgggagt 443

                                                                       
Query: 243 atatcagaagtgagacctcataaacaatcctcttaaattctctcaaactaagacatcagt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atatcagaagtgagacctcataaacaatcctcttaaattctctcaaactaagacatcagt 503

                                                                       
Query: 303 gcatcaaagacaaagcagtgcccacttctataatcacataattgctacaaaaccctgttg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcatcaaagacaaagcagtgcccacttctataatcacataattgctacaaaaccctgttg 563

                                                                       
Query: 363 ataattgactccatttataccacactattactaggcagattgcacatccatgtattacat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ataattgactccatttataccacactattactaggcagattgcacatccatgtattacat 623

                                                                       
Query: 423 agctttttgttgctatagagaaatgatttttaaatgattcaaggaacagaagatttattt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 agctttttgttgctatagagaaatgatttttaaatgattcaaggaacagaagatttattt 683

                                                                       
Query: 483 tgactcatagtcttagaaatgtggcctcatgatcatctcgcccgcagctctattgtcttt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgactcatagtcttagaaatgtggcctcatgatcatctcgcccgcagctctattgtcttt 743

                                                                       
Query: 543 agacacgtgccaaatcagaagtgttatggcagaagggtatggcaaaaggaaactgcacgt 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agacacgtgccaaatcagaagtgttatggcagaagggtatggcaaaaggaaactgcacgt 803

                                                  
Query: 603 tccaagacagcagagatgtgaagctaggaaacgcccagc 641
           ||||||||||||||||||||||||||||||| |||||||
Sbjct: 804 tccaagacagcagagatgtgaagctaggaaatgcccagc 842


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space:   651192
Effective search space used:   651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)