Query= MSMg01no399_p19.b1 MSMg01no399_p19.b1 CHROMAT_FILE:
MSMg01no399_p19.b1 PHD_FILE: MSMg01no399_p19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:08 2005
(633 letters)
>mm_chr8_101178600_101179633
Length = 1034
Score = 1139 bits (589), Expect = 0.0
Identities = 619/629 (98%), Gaps = 1/629 (0%)
Strand = Plus / Plus
Query: 6 ggaattcctatgttactttcaaaggaattacttaaattagtgggagaagtttataacaat 65
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcctatgctagtttcaaaggaattacttaaattagtgggagaagtttataacaat 265
Query: 66 gttaccacattcctcagaataatgctaactttagtatttttcaaatacttctttctttgc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gttaccacattcctcagaataatgctaactttagtatttttcaaatacttctttctttgc 325
Query: 126 aaatgatatcttttaaaaattatctgtatttctactaactatgtattaatttttgttgcc 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaatgatatcttttaaaaattatctgtatttctactaactatgtattaatttttgttgcc 385
Query: 186 ctataagaagtagaaattatatttattttgtttaagcaaaaataaattctgtgaaggatg 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctataagaagtagaaattatatttattttgtttaagcaaaaataaattctgtgaaggatg 445
Query: 246 ctcaaaaccttgggaagc-tggactgtataatatggattatatatgttgtcctggggccc 304
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 446 ctcaaaaccttgggaagcctggactgtataatagggattatatatgttgtcctggggccc 505
Query: 305 agaagccaccagctgttatttagtgagtactagttatgacaatgtattcaaaggtgtcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaagccaccagctgttatttagtgagtactagttatgacaatgtattcaaaggtgtcag 565
Query: 365 atccatcgcccgcacccagcatgtatctcagaatagctaccagtgcacctgggctacaca 424
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atccatggtttgtacccagcatgtatctcagaatagctaccagtgcacctgggctacaca 625
Query: 425 actgcaaacttactttaagcattaagaaatactgttttaatttttttttcatagcgaaat 484
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 626 actgcaaacttactttaagcattaagaaataatgttttaatttttttttcatagcgaaat 685
Query: 485 tatgaactttgagatcatacactttgtagattacaaggtgatgcattgatgtcacagaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tatgaactttgagatcatacactttgtagattacaaggtgatgcattgatgtcacagaaa 745
Query: 545 ataaacacagacatgggcttggtatttgtataccttcatggcttcagcattatggtgata 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ataaacacagacatgggcttggtatttgtataccttcatggcttcagcattatggtgata 805
Query: 605 tgtgacttctaatggtactgtacaaattc 633
|||||||||||||||||||||||||||||
Sbjct: 806 tgtgacttctaatggtactgtacaaattc 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space: 637952
Effective search space used: 637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no399_p19.g1 MSMg01no399_p19.g1 CHROMAT_FILE:
MSMg01no399_p19.g1 PHD_FILE: MSMg01no399_p19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:08 2005
(587 letters)
>mm_chr8_101339904_101340890
Length = 987
Score = 1112 bits (575), Expect = 0.0
Identities = 584/587 (99%)
Strand = Plus / Minus
Query: 1 acttattgattgacattatcaagcaggtagacagacactgtagcaggtaaaattgctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 acttattgattgacattatcaagcaggtagacagacactgtagcaggtaaaattgctttt 728
Query: 61 tttgtgttgttgcctgccaaactttaacagagaaagtgatgtgcttttgccagggagggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tttgtgttgttgcctgccaaactttaacagagaaagtgatgtgcttttgccagggagggc 668
Query: 121 tactatacaatcaggtaatgggtcttaagaatgctgcaaacattaatggtgtttgatcaa 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 667 tactatacaatcaggtaatgggtcttaaaaatgctgcaaacattaatggtgtttgatcaa 608
Query: 181 taatattactaccacaggtaaaatgctactccatttattattaagatattgctgaaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 taatattactaccacaggtaaaatgctactccatttattattaagatattgctgaaaatg 548
Query: 241 gagtgactcaaaggacttctagaaagtatgaataattgctatatcattagtccaatgaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gagtgactcaaaggacttctagaaagtatgaataattgctatatcattagtccaatgaaa 488
Query: 301 tgttaatggaagttttgtcatataacatgctgtgagtattcttttctgaaagattttaga 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 487 tgttaatggaagttttgtcatataacatgctgtgagtatttttttctgaaagattttaga 428
Query: 361 gttcctctgagctaatgcctgacacagacccacaattaccctatcaaagtctaatcttcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gttcctctgagctaatgcctgacacagacccacaattaccctatcaaagtctaatcttcc 368
Query: 421 tcctatccatgagctagtccagatagacaaagatgtcattaattctttattgctatattt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcctatccatgagctagtccagatagacaaagatgtcattaattctttattgctatattt 308
Query: 481 aatttttttcaaactatatcatgaaatataagccgagtgtaacaatgcattttttactga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatttttttcaaactatatcatgaaatataagccgagtgtaacaatgcattttttactga 248
Query: 541 atattctttttttcctgaatatttacaaatatagtgattaaataaca 587
||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 247 atattctttttttcctgaatatttaaaaatatagtgattaaataaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space: 563729
Effective search space used: 563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
