BAC Information

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BAC

Clone NameMSMg01-400A20
Chromosome8 (Build37)
Map Location 49,312,160 - 49,489,686
singlet/doubletdoublet
Overlap geneOdz3
Upstream geneStox2, 4930448N21Rik, D030016E14Rik, Rwdd4a, LOC384819, LOC667422, Ing2, LOC546058, Cdkn2aip, LOC100039801, Cldn22, Wwc2, LOC100040113, Dctd
Downstream gene2900073C17Rik, LOC100039866, 4930555F03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400A20.T7 (MSMg01no400_a20.b1)MSMg01-400A20.TJ (MSMg01no400_a20.g1)
ACCAG499766AG499767
length797790
length of high quality
(start - end)		448 (48 - 495)401 (78 - 478)
definitionCHROMAT_FILE: MSMg01no400_a20.b1 PHD_FILE: MSMg01no400_a20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:13 2005CHROMAT_FILE: MSMg01no400_a20.g1 PHD_FILE: MSMg01no400_a20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,489,244 - 49,489,686)(49,312,160 - 49,312,560)
sequence
NTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCG
CGGAATTCCATTTGTTCTCAGTTAACTAGACTACATCATGTTATATAGAC
TTGATAGGAATACCAGAGGTACACTTAAGCAAAGAAACCAATCCATGAAT
ACCTTACTGCGCTGCTTCTTCCAGTGTGGTCCCTGGGTCTACATCAGTGC
TTGAACTTCTGCCCATACCACTTAGGTTTTCCTTAGCCTACAAGACAATT
GTACAGACTGTTTGGAAGGCACCACTTTAATCTAATCCAGTGCCTGCTGT
TCAGCTTGGTGGCTTAACCCCTACTACAGAAGTAACCAAGCTCAGCCCAT
ACTCCTGACTCTGTAGTTTATCTGGCCACCCTGTTTCCTTTGTGTCAAGG
ACAGGCAACTGTGGCATGCCTTTGCAATGGTGGACAGTTGTGGGCTGCCA
GGCCGTATGTGCAGCTAGGTCGTCAATCCTTTATTTATTTCAGGGATTTC
AGAGTTTGGGGAACCAGCACCTTTAGGCGAAAGATTTATTTCCCAATCCA
CTATTAAGTATTTTAGCATTGTAAGTAATTGTACTGGGAATCTCATAAAA
TGCTTCCAGCTAAGAAAGAAAAAAAAGGTTTTCTGTGAAAAAGAACTGTT
TCCGCAGTTAGTGAGAAAATCCTGGAACAATGGACTTGCCCCCACATGCT
TGAAAACCGAAATCCCGCCTCTCCCTCCTCTGTGAAAAATGGGGTGGTGG
GGGCTTTGTGGAATCTCTTTTTCTCCGAAAAAAAAAAAACGTTTCCG

NCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTCACGAAAGATTCTTCAG
AGTGGCCGGGTTGGCACAGAAGTGCACACGGTGGAACCCCAAGCTTTCAG
TGGGGGGCGGGCACTGATGTCAGTTTCCTTCCTACTCCACCCAGTACCCC
AGGCTACCCCTGGCCAGCACAGGCTGCCACTCAAACCATGCTCTATGATG
GTTGGGCCATGTAGGCTTACAGGAGCTTAACTTCCGGTTTTGATCCCACC
CGCTAACGCTGACGTAAGGGTCCAACTCCAAGCCTCACAGAGAGCGACCT
TGACTGGTTGGTCCCCTCGCCTGGCTCACTACTGCTCGGTTATTGCTATC
TCTCCTAGACATTAAGATACATGTTCATGGTTACCATGACATCAAGTCCT
TCCCTCCCCACAGAAGTTCCCGAGCATCAGATGGTGGTCTCTTTCCTCCA
TCACAAAGTGGAGCATCCGAGGGACACACTATAGTATGAAAACGTCTTGG
AATCGCGCTTGACTTTTAGGGCCAAAAAGGGCCAGAAAGCCCCCTCTTTT
GGGTGCTTTTCTCTTTGGCCCCCCCCCCCCCCCCCCCCATAAATCTTCTC
CCGCCTTGGATGGCAATGCGGGCTCCTTGTTGGCAACGGTTACACCACGG
CTTGTTCCAATATACAAGAAAATAAAACCTTCTTGTTTTATCTTCCTCGT
ATGTCTGTCGTGTTTCTTTTTTATTGTCAATAAGAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_a20.b1 MSMg01no400_a20.b1 CHROMAT_FILE:
MSMg01no400_a20.b1 PHD_FILE: MSMg01no400_a20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:13 2005
         (448 letters)



>mm_chr8_49489039_49489886
          Length = 848

 Score =  795 bits (411), Expect = 0.0
 Identities = 435/443 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccatttgttctcagttaactagactacatcatgttatatagacttgataggaata 65
           |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 gaattccatttgttctaaattaactagactacatcatgttatatagacttgataggaata 589

                                                                       
Query: 66  ccagaggtacacttaagcaaagaaaccaatccatgaataccttactgcgctgcttcttcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ccagaggtacacttaagcaaagaaaccaatccatgaataccttactgcgctgcttcttcc 529

                                                                       
Query: 126 agtgtggtccctgggtctacatcagtgcttgaacttctgcccataccacttaggttttcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 agtgtggtccctgggtctacatcagtgcttgaacttctgcccataccacttaggttttcc 469

                                                                       
Query: 186 ttagcctacaagacaattgtacagactgtttggaaggcaccactttaatctaatccagtg 245
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 468 ggagcctacaagacaattgtacaggctgtttggaaggcaccactttaatctaatccagtg 409

                                                                       
Query: 246 cctgctgttcagcttggtggcttaacccctactacagaagtaaccaagctcagcccatac 305
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 408 cctgctgttcagcttggtggcttaacccctactacagaagtacccaagctcagcccatac 349

                                                                       
Query: 306 tcctgactctgtagtttatctggccaccctgtttcctttgtgtcaaggacaggcaactgt 365
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 348 tcctggctctgtagtttatctggccaccctgttgcctttgtgtcaaggacaggcaactgt 289

                                                                       
Query: 366 ggcatgcctttgcaatggtggacagttgtgggctgccaggccgtatgtgcagctaggtcg 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ggcatgcctttgcaatggtggacagttgtgggctgccaggccgtatgtgcagctaggtcg 229

                                  
Query: 426 tcaatcctttatttatttcaggg 448
           |||||||||||||||||||||||
Sbjct: 228 tcaatcctttatttatttcaggg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no400_a20.g1 MSMg01no400_a20.g1 CHROMAT_FILE:
MSMg01no400_a20.g1 PHD_FILE: MSMg01no400_a20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:13 2005
         (401 letters)



>mm_chr8_49311960_49312760
          Length = 801

 Score =  752 bits (389), Expect = 0.0
 Identities = 398/401 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgttcacgaaagattcttcagagtggccgggttggcacagaagtgcacacggtggaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agtgttcacgaaagattcttcagagtggccgggttggcacagaagtgcacacagtggaac 260

                                                                       
Query: 61  cccaagctttcagtggggggcgggcactgatgtcagtttccttcctactccacccagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccaagctttcagtggggggcgggcactgatgtcagtttccttcctactccacccagtac 320

                                                                       
Query: 121 cccaggctacccctggccagcacaggctgccactcaaaccatgctctatgatggttgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaggctacccctggccagcacaggctgccactcaaaccatgctctatgatggttgggc 380

                                                                       
Query: 181 catgtaggcttacaggagcttaacttccggttttgatcccacccgctaacgctgacgtaa 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 381 catgtaggcttacaggagcttaacttccggttttgatcccacctgctaacgctgacgtaa 440

                                                                       
Query: 241 gggtccaactccaagcctcacagagagcgaccttgactggttggtcccctcgcctggctc 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gggtccaactccaagcctcacagagagtgaccttgactggttggtcccctcgcctggctc 500

                                                                       
Query: 301 actactgctcggttattgctatctctcctagacattaagatacatgttcatggttaccat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actactgctcggttattgctatctctcctagacattaagatacatgttcatggttaccat 560

                                                    
Query: 361 gacatcaagtccttccctccccacagaagttcccgagcatc 401
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacatcaagtccttccctccccacagaagttcccgagcatc 601


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space:   310464
Effective search space used:   310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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