Query= MSMg01no400_d14.b1 MSMg01no400_d14.b1 CHROMAT_FILE:
MSMg01no400_d14.b1 PHD_FILE: MSMg01no400_d14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:28 2005
(496 letters)
>mm_chr8_31293805_31294700
Length = 896
Score = 909 bits (470), Expect = 0.0
Identities = 492/510 (96%), Gaps = 18/510 (3%)
Strand = Plus / Plus
Query: 1 catgtcctcttgccttggaggctttaccctcctaagtcctaccctgaaatcaataaacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 catgtcctcttgccttggaggctttaccctcctaagtcctaccctgaaatcaataaacct 250
Query: 61 cttctacctactattttaatctatctatctatctatcctgatatctacctattaatctat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 cttctacctactattttaatctatctatctatctatcctgatatctacctattaatctat 310
Query: 121 ctaactatttgtctaattatctatttatctatctatatgactttcacacactcacacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ctaactatttgtctaattatctatttatctatctatatgactttcacacactcacacaca 370
Query: 181 catacacactctcacacacaagctctctttctctcacactctcctctctctctctctctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 catacacactctcacacacaagctctctttctctcacactctcctctctctctctctctc 430
Query: 241 tctctctctctctcatacacacacacatataatctctctcacacactctcctcctcctct 300
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tctctctctc----atacacacacacatataatctctctcacacactctcctcctcctct 486
Query: 301 tcctcctccctctctctctctctctctctctctctctctctctctctctctctctc---- 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tcctcctccctctctctctctctctctctctctctctctctctctctctctctctctctc 546
Query: 357 ----------cccgtctctctaatacaactataatgcaagcaggaagtgtgtacagctcc 406
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tctctctctccccgtctctctaatacaactataatgcaagcaggaagtgtgtacagctcc 606
Query: 407 tccaacctctagcacctagcctgtactgtttctccagaggtctgaagtgccctttataca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tccaacctctagcacctagcctgtactgtttctccagaggtctgaagtgccctttataca 666
Query: 467 tcacagttcagaatgtaggggcggatctgt 496
||||||||||||||||||||||||||||||
Sbjct: 667 tcacagttcagaatgtaggggcggatctgt 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 164
Number of extensions: 46
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_d14.g1 MSMg01no400_d14.g1 CHROMAT_FILE:
MSMg01no400_d14.g1 PHD_FILE: MSMg01no400_d14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:28 2005
(246 letters)
>mm_chr8_31467064_31467709
Length = 646
Score = 453 bits (234), Expect = e-132
Identities = 243/246 (98%)
Strand = Plus / Minus
Query: 1 attatgttttgggtaaagttccataaactgagacttgagtgtgacgtggggtacccatgt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 446 attatgttttgggtaaagttccataaactgagacttgagtgtgaggtggggtacccatgt 387
Query: 61 ccccagtgtcatgctgatactcatatagctagtaaaacatctgtgttctttgagcttcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccccagtgtcatgctgatactcatatagctagtaaaacatctgtgttctttgagcttcag 327
Query: 121 aaggctttttcttatccttccaatacagaaaaaagatgctcaggataagagagtgatgga 180
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 326 aaggctttttcttatccttccagtacagaaaaaggatgctcaggataagagagtgatgga 267
Query: 181 gtattccggaagggtttgtgggggagctactgaagaaactgatgtccaattagacaggga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtattccggaagggtttgtgggggagctactgaagaaactgatgtccaattagacaggga 207
Query: 241 caaaat 246
||||||
Sbjct: 206 caaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
