BAC Information

Click to search

BAC

Clone NameMSMg01-400F13
Chromosome8 (Build37)
Map Location 64,972,359 - 64,972,603
singlet/doubletsinglet
Overlap genenone
Upstream geneCbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775, LOC384830
Downstream geneLOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400F13.T7 (MSMg01no400_f13.b1)MSMg01-400F13.TJ (MSMg01no400_f13.g1)
ACCAG499991AG499992
length771779
length of high quality
(start - end)		626 (41 - 666)245 (74 - 318)
definitionCHROMAT_FILE: MSMg01no400_f13.b1 PHD_FILE: MSMg01no400_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:37 2005CHROMAT_FILE: MSMg01no400_f13.g1 PHD_FILE: MSMg01no400_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAATCCGCGGAATT
CTCTGGGTATACACTACACAATTTTTAATTGTGTTATTCGTTTCTTGAAA
TCTATTTTTTCAACTTTTATATATTTTGTATATCAGCCCTATATTAAATG
CACAGTTGTTAAAAATGTTTTCACATTATGCAGGCCACTGTTTTTTCTAA
ATGCCAATGTCTTTTTCTAGGCAGAAACTTTTCAGTTGTATGAGTTCCCA
TTTATTGTTGATCTTACTACCTATGCTAATGGTGTTCTTTTTAGAAAATC
TTCACCTTTGCCAACAAGGTGAAAGTCTTGACCCACTTTCCACATACCTG
GTTTTGTACTGAAGCTTTGACCAGTTTGGGTTTGACTTATGCAGGGTGAT
AAGTATGAACCTATTTGCAGTCTTCTACTTGAAGCCACCCTATTTGTCTA
GCACCTTTAGTTGAAGATGCTCCCCCAACCCAGTGTTTATTTCTGGTTTC
TTTATCAAAAGCATGATAAAGCATGATAAAGCAAGATGCATGCATTATGT
CTGTGTCTTCAGTTTGATTTTCATGGTAAATGTGACTATTTTCTGCCAAT
AGTATGCTGATTTTATTAGTGTAGCTCTGTCATGCAATTTGAAATTTCAG
ACAGTGATACCTTCAGCAGGTTTTTAATTGTTCANGTTAATTTTTGCATT
CTGCTTATATTACACATTTCCATGTAAAGCTGATAACTGTCCTTTAAAGA
TCTGGTAANGATTATGTTGAA

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTGAGAAAGTTAAAACATCTCATAT
TTGAGAGCTTAAACTTAAAAACAAATCTAAATACTGAATCCTATTGTCTC
TGCCCATTTATATTTTGGAAGTCTTTGTTTAGAAAGCATATAAAGCCAAG
CAGTGTCCCTCGTTACAGTATCTCTAACACATATCATGGATGCTTTGGAG
GTGGGGCTCATTTTAACTGACCCTGATCATGGCACCAGAGTCACATGCCA
AATCCCAGTTGATTAAGGAATCTTTACAGATGCAGAACAAGAAGAAAATA
GAACTATCAGAGCTGTGCCTATAAATACAGTGTGCGGTGACAGGCTGTTC
AGAAGTATTTATTAAATGAAAAATGGTTTTTTCACTTCGACTGCTGTATT
TCAGTAACAGCCCCTAGAGCTCTCCGTCAATACCCTTTCACACATATAAT
TGTCACGGGGATGGTACTCAGGACCAGCAAAGGCACCTTTGTCGCAATAA
GAATTTATCCTTAAAACTTTACAGGANAAGATAAATTGAGGTCATATTTG
TAGCAGAAGAGTGGTTTTTACTTGTGAGGATCACTTTGCTATTTAGTACC
CAAGGGACAAAAGAGAATAGATAGGACAGTCTACAAGTTCCCATGAAGAA
GAAAAAGCAAGGACAGTCAACCAGTTTTTTGACCAATTTCGGGGGGGGTC
CTCCCAAACGATGAACCTATTTCTGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_f13.g1 MSMg01no400_f13.g1 CHROMAT_FILE:
MSMg01no400_f13.g1 PHD_FILE: MSMg01no400_f13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:37 2005
         (245 letters)



>mm_chr8_64972159_64972803
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttgagaaagttaaaacatctcatatttgagagcttaaacttaaaaacaaatctaaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acttgagaaagttaaaacatctcatatttgagagcttaaacttaaaaacaaatctaaata 386

                                                                       
Query: 61  ctgaatcctattgtctctgcccatttatattttggaagtctttgtttagaaagcatataa 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 385 ctgaatcctattgtctctgcccatttatattttggaagtcttagtttagaaagcatataa 326

                                                                       
Query: 121 agccaagcagtgtccctcgttacagtatctctaacacatatcatggatgctttggaggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agccaagcagtgtccctcgttacagtatctctaacacatatcatggatgctttggaggtg 266

                                                                       
Query: 181 gggctcattttaactgaccctgatcatggcaccagagtcacatgccaaatcccagttgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggctcattttaactgaccctgatcatggcaccagagtcacatgccaaatcccagttgat 206

                
Query: 241 taagg 245
           |||||
Sbjct: 205 taagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |