BAC Information

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BAC

Clone NameMSMg01-400H02
Chromosome8 (Build37)
Map Location 31,566,769 - 31,567,147
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628189
Downstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400H02.T7 (MSMg01no400_h02.b1)MSMg01-400H02.TJ (MSMg01no400_h02.g1)
ACCAG500064AG500065
length778781
length of high quality
(start - end)
554 (68 - 621)469 (75 - 543)
definitionCHROMAT_FILE: MSMg01no400_h02.b1 PHD_FILE: MSMg01no400_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:45 2005CHROMAT_FILE: MSMg01no400_h02.g1 PHD_FILE: MSMg01no400_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTCCTGACTTTCCTAATCAGAACAGCAAATGCACTAAATAAAGATAGA
ATATTAAAAGCAGTAAGGGAGAAAGGTCAAGTAACATATAAAGGCAGGCC
TATCAGAATTACACCAGACTTTTCATCAGAGACTATGAAAACCAGAAGAT
CCTGGACAGACATTATACAGAACCTAAGAGAACACAAATGCCAGCCCAGG
CTACTTTACCCAGCCAAACTCTCAATTACCATAGATGGAGAAACCAAAGT
TTTCCAGGACAAAACTAAATTCACACATTGTCTTTCCACGAATACAGCCC
TTCAAAGGATAATAACAGAAAGAAAAAAAAACAATACAAGGACAGAAACC
ACGCCCTAGAAAAAGCAAGAAAGTAATCCCTCAACAAACCAAAAAGAAGA
CAGCCACAAAAACAGAATGCCAACTCTAAAAACAAAAATAATAGGAAGCA
ACCATTACTTTTCCTTAATATCTCCTAATATCAATGGACTCAATTCCCCA
ATAAAACGACATAGACTAACAGACTGGCTACATAAACAGGACCCAACATT
CTGCTGCTTACAGGAAACCCATCTCAGGGAAAAAGACAGACACTGCCTCA
GAGTGAAAGGCTGGAATACAATTTTCCAAGCAAATGGTCTGAAGAAACAA
GCTGGAGTAGCCTTTTCTAAATCAAATAAAATTGACTTCCCACCCCATGG
TATTAAAAAAGAAAAAGAGGGGAAACTT
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAAGCCCAAGGTCTTGCTAAGGACGA
ACTAGGACTGTTGGAACACTGGCGGACGGCTTTAGCTATGTCAGAATTCA
ATCTTAAAAGGCACTTATGATAGGAAAATATTGAAAGAGAGCATGTGGAT
CCATACACTAGACTAACGCGGGAATGGAACGCGGGAATGAAAGATTACTG
TATGGGTAGGGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGAAACTCTT
TTGCCTCATGAGTGACTTTTAAGCCTCTCAGCTTGTCCAGTTGACTCAAC
CAGAGAACGTAGCATGGACCAAATCCTTAAGAACATGAATTTAATATGGA
CACCTTCAGCCGGACTTAGGGAACACTGGCTAGTCTTAAAACTTTTTCTT
AACTCTCCCTCAAACCTATTGTCTCCTTCCTGTTCCTACACACTCATTGC
AAGTTCACCTTAGCCTTTGACACTTTCCTGGACTCTTCCAGGTTTGTAGG
TCTAATGTGAGGTGCTCACTTTGACCGAACTCTCCAGAGTGGGGTTGTCC
TCATGGNTCCCCCTCCCGCTGCCTTCATTTTCCCTGTAACATGTTTCCGT
TTCGATTCCCATTCCCCCACTTTTCTCTGTTTCGCATCCCCCTGGGCTTT
CAACACGCCTGGTCCTTAATTCGCCTTATATCTCTTCGAAAACTCCCATA
TCTTATCCCCCTCTAGAATATTTCTGGGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_h02.g1 MSMg01no400_h02.g1 CHROMAT_FILE:
MSMg01no400_h02.g1 PHD_FILE: MSMg01no400_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:45 2005
         (469 letters)



>mm_chr8_31566279_31567147
          Length = 869

 Score =  710 bits (367), Expect = 0.0
 Identities = 376/379 (99%)
 Strand = Plus / Minus

                                                                       
Query: 91  ttatgataggaaaatattgaaagagagcatgtggatccatacactagactaacgcgggaa 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 ttatgataggaaaatattgaaagagagcatgtggatccatacactagactaacgcgggaa 810

                                                                       
Query: 151 tggaacgcgggaatgaaagattactgtatgggtagggaacgctagactccaggaggagag 210
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tggaacgcgggaatgaaaaattactgtatgggtagggaacgctagactccaggaggagag 750

                                                                       
Query: 211 cttccttgaaactcttttgcctcatgagtgacttttaagcctctcagcttgtccagttga 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 cttccttgaaactcttttgcctcatgagtgacttttaagcctctcagcttgtccagttga 690

                                                                       
Query: 271 ctcaaccagagaacgtagcatggaccaaatccttaagaacatgaatttaatatggacacc 330
           ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ctcgaccagagagcgtagcatggaccaaatccttaagaacatgaatttaatatggacacc 630

                                                                       
Query: 331 ttcagccggacttagggaacactggctagtcttaaaactttttcttaactctccctcaaa 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttcagccggacttagggaacactggctagtcttaaaactttttcttaactctccctcaaa 570

                                                                       
Query: 391 cctattgtctccttcctgttcctacacactcattgcaagttcaccttagcctttgacact 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cctattgtctccttcctgttcctacacactcattgcaagttcaccttagcctttgacact 510

                              
Query: 451 ttcctggactcttccaggt 469
           |||||||||||||||||||
Sbjct: 509 ttcctggactcttccaggt 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space:   394281
Effective search space used:   394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)