BAC Information

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BAC

Clone NameMSMg01-400I19
Chromosome8 (Build37)
Map Location 108,235,592 - 108,235,834
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik
Downstream geneGfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1, Tmco7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400I19.T7 (MSMg01no400_i19.b1)MSMg01-400I19.TJ (MSMg01no400_i19.g1)
ACCAG500146AG500147
length749887
length of high quality
(start - end)		241 (82 - 322)---
definitionCHROMAT_FILE: MSMg01no400_i19.b1 PHD_FILE: MSMg01no400_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:53 2005CHROMAT_FILE: MSMg01no400_i19.g1 PHD_FILE: MSMg01no400_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:13:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATTTTTTTATAATTTGCGGACGCAAAAGGAAGACTATTTCAACAGCAC
CGCGGAATTCAGATATTTACGAATACCACCCTCAAGTTCCCTGTGCCTGT
GGTCTCTGACCTCACAGATTCTTGCCGCAATCCTATTTTACCTAAAGTAC
TTGATGTCTCTGTCACACAGAGTACCTGCACTCTCGATGTCTCTGTCCCT
CTAGCATTTTGCTCTTACCTCAGGTGCTTTGAAACTTTTTTTTTTTTTTT
TGGTTTTTTGAGACAGGGTTTCTCTGTATAGTCCTGGCTGTCCTGGAACT
CACTTTGTAGACCAGGCTGTTTTCTTTTTCAGAAATCTACCTGCCTCTCC
CTCCCGATTGCTGGGTTTAAAGGCGTGCACCACGCCCGGCTGCTTTGAAA
CTCTTTAATGGCTGTGTGGAATTGCCTGATCAATCAAGCCTTTTTTTGCT
TTCATTGTTTACATGGGCTTTCCCTGTCCACTATTCCTTTGTTCCTGCAT
CCTTCTACCTGGTTTAGCCATGCATGACCCCGCTATACACTACATATACA
TTATTCCCATACCTACTCCTACCACACTCCTCTTTCAGCTTAATCACAAA
TCACTACATTGCCCCGATTTTCGTCCACTCTTTGATCCCTCTCTTACTGT
GACATTTTTTATTTTTCTTATAATTTTTCCCCTTCTCTATTTTTATTTGC
CTCTTCTCCTCTATTAATTGTCTGCCGTTTCTTTTATCACGTTTCATGT

TTACAACGNNNNNNCCCCNNNNNCCNCCGGGTTTCAAAAACTTTGGNTGA
CNCTANNNAATGTTTTCAGAAACATTCACCTGACAAGAGATGATTGTTAG
TAGCGAGCTGTCAGCNAGGGTGGCGTCNNCTANNTNCCTAATCCTCACTT
CCNAACCCAAANNNNCTTTCTCCAAACCCTNCCCCACCTANNAACTTNNC
CCAAAAACCCTACCTCCTCCCNNAATTTCCNNNNNNNTNNNNNACCCTNA
NNNNCCCCTTTCTTAANNNAATTTTTTTTTTACCCCTCCCNNNTTTTTTT
ACTTTTTCCCNNNNNCCCCCCANCCCCCCNNNNNCAAAAANNNAAAATTT
TTTTTCTTTAAANCCNNNNCCCCCNNAAACCCCCCNCAAANNTTNNNNCC
CCCCAAAACCCNCCCAAANNNNNCANNNNCCCTTTCTTTTTTTTTTTTCC
CCCCCCCCCCCCCCCNNNNNNCCCCCTTCCCCCCNCCNTNNTNCCCCCCC
CCCCCCCCCTCCNNNNNNNNTTTTCCCCCTCCCCCCCCTNCNTTTTCCCC
CCTCCTTTTATTCCCCCCAAAAAANNNNCCCCCTCNNCNNNTTCCTTTCC
TCCCTTCCCCCCCCCCCNCCCCCCCTCTTTTCCCNNNNCCCNNTTTTCCC
CCCCTTTCCCCNNCCTCTCCCTCTCTTTTTTTTTTNNNTTTTTTTTTTTC
TCNNNCCTCTCTCTTCCTCCNCNCACTCTTCCTCCTCTCTTTCCTCCNNN
NCTTNTTNTNNTTNNNNNCCTTNTTCCTCTCNTTTTCCCCTTTCTCCTNC
CCTTNTCTCTCCTTNCTCTCTTTTTTTCTTCTCTTCTCTCTCTCCCCCCC
ACCCNTCTTTTCCTCTTATTTCATTATTATTAAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_i19.b1 MSMg01no400_i19.b1 CHROMAT_FILE:
MSMg01no400_i19.b1 PHD_FILE: MSMg01no400_i19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:53 2005
         (241 letters)



>mm_chr8_108235392_108236032
          Length = 641

 Score =  427 bits (221), Expect = e-124
 Identities = 236/243 (97%), Gaps = 5/243 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagttccctgtgcctgtggtctctgacctcacagattcttgccgcaatcctattttac 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 tcaagttccctgtgcctgtggtctctgacctcacagattcatgccgcaatcctattttac 260

                                                                       
Query: 61  ctaaagtacttgatgtctctgtcacacagagtacctgcactctcgatgtctctgtccctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaaagtacttgatgtctctgtcacacagagtacctgcactctcgatgtctctgtccctc 320

                                                                       
Query: 121 tagcattttgctcttacctcaggtgctttgaaactttttt-ttttt----tttttggttt 175
           |||||||||||||||||||||||||||||||||||||||| |||||    ||||||||||
Sbjct: 321 tagcattttgctcttacctcaggtgctttgaaacttttttatttttattttttttggttt 380

                                                                       
Query: 176 tttgagacagggtttctctgtatagtcctggctgtcctggaactcactttgtagaccagg 235
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcgagacagggtttctctgtatagtcctggctgtcctggaactcactttgtagaccagg 440

              
Query: 236 ctg 238
           |||
Sbjct: 441 ctg 443


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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