BAC Information

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BAC

Clone NameMSMg01-400K11
Chromosome8 (Build37)
Map Location 84,556,896 - 84,557,003
singlet/doubletsinglet
Overlap geneInpp4b
Upstream geneLOC236010, LOC384852
Downstream geneLOC671182, Il15, EG666564, LOC675800, EG666289, Zfp330, Rnf150
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-400K11.T7 (MSMg01no400_k11.b1)MSMg01-400K11.TJ (MSMg01no400_k11.g1)
ACCAG500225AG500226
length799867
length of high quality
(start - end)
108 (166 - 273)---
definitionCHROMAT_FILE: MSMg01no400_k11.b1 PHD_FILE: MSMg01no400_k11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:02 2005CHROMAT_FILE: MSMg01no400_k11.g1 PHD_FILE: MSMg01no400_k11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAATTAGTCTCATGTACNGAGANGAGNNNCNATTTCTTACTCGCCGNGG
AAGNCAGGGAACTAACAGCACTAAGGAAGGGNGAANACGANGCAACAGGA
AACAGGGAAAGGAGCATTTTCACGCCAAACACTGAGAGGNACACGNNAAN
GGAACACANNGGNTCTATACTCAGAGCCTCATTCTCATCTTTCCCGCTGT
TCTTTCTCCATATGCCCTGCCACAGAGGACTGGTATGAACAGCTGCACCC
ATTTATCCTTACCTTGAAGGAGTGCATGGGAGAAGTGGTGAACCGAGCAA
AGCAATCCCTGACATTTTTTTTTTTTTTGGAACTGGCCTACAGCCTGCCC
CACGGATTGATGCTGACTCTGACAAAAGACATTGGCTTCATTCATGCGGT
GTTTGCCCCTTTGATGCGCATACATAACATTGTTCAATTGCTAACTGTCC
TGCCTTTGCCCGCAATCTAAACTCCACCGTTTGGCCGTTATCTTTAATGA
TTCTTTTTCTAACCCCTCGTAACTCAGTTTTTGTACATAAATATATATAA
TGTTGCATTACTCTTAGATCTAATTTCCCTAACTATTGGGAATTCCTTTT
AGGGAATAAAGAACAATACTCCTATTTTAATTAATTTAATAGCCATTTCT
GTTATGTAGGGAAACAGCTCAATCTTTTTTTTTTATTTCATTTCGATTTG
TTCTACATCTTTAATCCCTATTTGTGATCTTTAATTTCTACCTATTTTCA
TTCTTTCATGTTTCTCCCACACTTCTCCTGATATGGCGCTGATCTTCGN
AACAATGAATTTGGGAGGGGGGAGAGAGAATGTTTCCCACGCGGGGGGGA
AGGANAGAAGTTACCGAAAAGGGGGGGAGAGNAGAAGGAGAAAGAAGGAA
GAAAGNCAAAGAGAAAATTAACCACCACGCACACCAAGCCCCACGGAAAA
GCACCCACGCACAAAAGAAAGCCAGACAGCCCCGGGCCAGGGCCAAGGCC
AGGAGAAAAGGGAACAACCGCACCCCACAAACAGCCGCTGCCAGCAACCG
AGATGTCTTCATCCTGGACTACTGCAGGCAGACCCTTATTTCAAATGGAA
GGCCCCCTGGAGGGACGTGTTTTTTTTTTTCCACAGCCCCAAACAAACAC
CCTTTTCCACCAGGAGCTTGCCTCACGCCTACCGAGATACCTCCCATCCT
GCCCTAACTGTCACGCCCGTCTCTGCTAAATGTATGCCTGTCCTCACTAC
CTGACCAACCCTAACACCTCCCATCTCTATCTATCTAATCTGCAACTTCC
GCTCGGGTTCTCTTCCACACGACGATTCTACTGGCCTTATGCCCATAATC
ACCGCCTAAAATTGTCTCCTTACTATTTACATATCTGCTCTTGTTATATC
ACCAAACGGCTATCCTTATCTTCCAATCGGAATTATATTAACATCACACC
CTTTTTAATGCCCACTCGCCCTCTGCTCCCCATTCACTCGTTGCCGCACT
TTATCCCTACAACCTCCTATCCGGCCCGTACATTCTCTTTTTTTGTTTAA
CTATCACTCATTTATTACCGACCCAGCTCCTCTCACCAGATACCCTACTC
CGTGGTACATCACATTACNTACATACAGCCACATATTTTGCCATCCAACT
CTACACTTCACACCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no400_k11.b1 MSMg01no400_k11.b1 CHROMAT_FILE:
MSMg01no400_k11.b1 PHD_FILE: MSMg01no400_k11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:02 2005
         (108 letters)



>mm_chr8_84556696_84557203
          Length = 508

 Score =  186 bits (96), Expect = 4e-52
 Identities = 105/108 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tatactcagagcctcattctcatctttcccgctgttctttctccatatgccctgccacag 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatactcaaagcctcattctcatctttcccgctgttctttctccatatgccctgccacag 260

                                                           
Query: 61  aggactggtatgaacagctgcacccatttatccttaccttgaaggagt 108
           |||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 261 aggactggtatgaacagctgcacccactcatccttaccttgaaggagt 308


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 508
Length adjustment: 8
Effective length of query: 100
Effective length of database: 500
Effective search space:    50000
Effective search space used:    50000
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)