Query= MSMg01no401_g11.b1 MSMg01no401_g11.b1 CHROMAT_FILE:
MSMg01no401_g11.b1 PHD_FILE: MSMg01no401_g11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:01 2005
(540 letters)
>mm_chr8_58598579_58599518
Length = 940
Score = 977 bits (505), Expect = 0.0
Identities = 531/541 (98%), Gaps = 2/541 (0%)
Strand = Plus / Plus
Query: 1 acagctcccattataatacatccagtaaaaactactctagaaccatgcttctcaaggatt 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 201 acagctcccattataatacatccagtaaaaactacactagaaccatgcttctcaaggatt 260
Query: 61 agtctcagatgtgaagtagcaatatgtgttctattctttcaattgcacatggagccaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtctcagatgtgaagtagcaatatgtgttctattctttcaattgcacatggagccaaag 320
Query: 121 tcccctctaattatctttattactacctagtatcatcctgaccactgatatttacagcca 180
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 tcccctctaattatctttattactacctagtatcatcctgaccactgatacctacagcca 380
Query: 181 tagccagtcactttgttttgcctctcctctcctgccccacccacttctctttgtcnnctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tagccagtcactttgttttgcctctcctctcctgccccacccacttctctttgtcttctc 440
Query: 241 nnattgtattcttgctcctttgtaatagtgtcatataacacactgattttcagtatctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattgtattcttgctcctttgtaatagtgtcatataacacactgattttcagtatctca 500
Query: 301 aaaatgtggttttagtccttgatcactccattttaaatattgttttgtcttggataaaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaatgtggttttagtccttgatcactccattttaaatattgttttgtcttggataaaat 560
Query: 361 tgggcaagaaaagcctgaccttccagccagtctttatgtgtcaattgctttaacttcatt 420
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggcaagaaaagactgaccttccagccagtctttatgtgtcaattgctttaacttcatt 620
Query: 421 tgtctaattagatatatttgaggggataaatttaaaaaaaa-acacacttgtatctatgt 479
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct: 621 tgtctaattagatatatttgaggggataaatt-aaaaaaaacacacacttgtatctatgt 679
Query: 480 atttatctccatttccacagttgccatcgtttctaaagtctgatatgaacaaatcaacta 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttatctccatttccacagttgccatcgtttctaaagtctgatatgaacaaatcaacta 739
Query: 540 g 540
|
Sbjct: 740 g 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_g11.g1 MSMg01no401_g11.g1 CHROMAT_FILE:
MSMg01no401_g11.g1 PHD_FILE: MSMg01no401_g11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:01 2005
(466 letters)
>mm_chr8_58786590_58787456
Length = 867
Score = 795 bits (411), Expect = 0.0
Identities = 453/467 (97%), Gaps = 1/467 (0%)
Strand = Plus / Minus
Query: 1 tataagaaagcagcctgagcaagcagtgatgatcaagccagtaatcagcgcttctctatg 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 tataagaaagcagtctgagcaagcagtgatgatcaagccagtaatcagcgcttctctatg 758
Query: 61 atctctgcctcagctccttcttctaagttcctactctttgtgagcttctaccctcactgc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 757 atctctgcctcagctccttcttctaagttcctaatctttgtgagcttctaccctcactgc 698
Query: 121 ttttgatgatgaactgttatatgaaaatgggagtgtattaaatcacgcctatcccaaaga 180
||||||||||||||||||||||||||||| |||||||||||||||| ||| ||| |||||
Sbjct: 697 ttttgatgatgaactgttatatgaaaatgtgagtgtattaaatcactcctctcctaaaga 638
Query: 181 ataggcacccagggataaggaacttgcccttgataatatacaggtgttgactaaactttt 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ataggcacccaaggataaggaacttgcccttgataatatacaggtgttgactaaactttt 578
Query: 241 catattttgttactagggtgtgtttggatatatttgttttaacactttggcatataccac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 catattttgaaactagggtgtgtttggatatatttgttttaacactttggcatataccat 518
Query: 301 ctagcacaaatgtcatgtttttaaattacacacccttactaaattcacaagggagtagag 360
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 517 ctagcacaaatgtcatgtttttaaattacacacccctactaaattcacaaggaagtagag 458
Query: 361 gccacttcataacacattacta-ttttttaccctgtcaaaagttatctcacatgtattac 419
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 457 gccacttcataacacattactatttttttaccctgtcaaaagttatctcacatgtattac 398
Query: 420 catttggaaatgttaaaataacctttgaaaagtaggaagtggaaaca 466
||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 397 catttggaaatgttaaaataacctttgaaaagtagaaagtggaaaca 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 867
Length adjustment: 10
Effective length of query: 456
Effective length of database: 857
Effective search space: 390792
Effective search space used: 390792
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
