BAC Information

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BAC

Clone NameMSMg01-401G21
Chromosome8 (Build37)
Map Location 43,815,981 - 43,851,622
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC671994, Zfp353, EG620772, LOC628212
Downstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401G21.T7 (MSMg01no401_g21.b1)MSMg01-401G21.TJ (MSMg01no401_g21.g1)
ACCAG500818AG500819
length796773
length of high quality
(start - end)		464 (46 - 509)478 (77 - 554)
definitionCHROMAT_FILE: MSMg01no401_g21.b1 PHD_FILE: MSMg01no401_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:03 2005CHROMAT_FILE: MSMg01no401_g21.g1 PHD_FILE: MSMg01no401_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:03 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(43,815,981 - 43,816,440)(43,851,145 - 43,851,622)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCAGACTTTTCTCTTTCAATAACAACTAATTACAAAAGCACTGA
ATACCCACTCTCCCTTAATCTTAATGCTAGAGGCAACACACAGACGACAC
ACAAACTAATACTAATTTTCATTTATTAAGACTATAAATATTCCCCATAG
ACATTTTAAAAGTTACATTGTTAAATAAGCCCCAATGACAAAACAAAATA
CCACCATAATCTAAATGGTGTGCAATAAATATTTGATCAAGAAATTAAAT
TAATGCCCTCATTAAAATAAGTCTCTTTGTTTTTATTTGCTTATGTGGCA
AACTTATTTTCAGTTAGAGGTGTTGGTTACTGCCAAGGTATGTGTGCCAC
TACTGTACCCTTATGGGTATTGTGGCAAGCTCTTCATTATTGTGGTTCAT
AGGCATCAAAGTTATATGTGAGCATTAGTTGCTTTCTTCCTTTGGAAGCT
CACATGGTGCCTTTTGTTCCCATGAAAGTTGGTCCAAGAAGAAAGGTTTA
GGTCAGTTCCAGCTCAGTGGCTTCTAGATCCTGTATCTAAAATGCAGTGT
CTTCAGCAAAACGGACTTACCCTCAAGCTCCGGGGAAGAAAGCCAGAACA
TAAGTATCTTTCCACCCCCACCAAAGAATAACCGGGGATAAAGAAAAGAA
AAAAAGGGCGAGGAGGCTTCTTCCGGGGAAAAAAATGGTTTTCCCCCCCC
CCCGGGGGGCGGCCCGGGGTGCCTTCCTTAGGGGGAAGATTTCTCC

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAATGTTTCATGCAGAGCAGAAC
AATACATTTAGAATTGGTTAGATTGGCAGAGTCTCAATGCAGGTATAAAC
ATTTAGCTCCAACCATTTCCCTGGCCACAGTAGAAGAGGATATGAATAAT
TCTTTCTCAATTTAGTCATCCTGCAATGAATACAGATTTCAAAAAATTAT
GTGAAAATTAATGTTAAATAAAATAAGTTTGCAAAAGTTGATTACTCAGC
TTGTATATGTTGAAGATTTCTTATTTTAAAATATATTCCTTGCTTTTAAT
TTTTCATCAATGCTATATGTGATTTTTTAAATTGATATATCTGAAGACTA
GACAGTATACTACTTGGTAATTAGCGAATGGCATCTGAATGAATGAAGAT
TTTAATGATATATGTTATTACTCTCACATGCTTTAGGTTGAAGACTAATA
ATTACCACTGCTTTCTTTCTCTGTATATCTGAATATAGTCTTATCTCTCA
AGACGTAATCATTCTCTGAGTACAATGGCCAATTTTTCTTTTGTTTCCAA
GAGATCTTGGGTTCTTTTCTTTTCAGCCTTTGGNCAATCCAACTCTGCTT
CCCTGGGGCTTTACCCTGGCTCCCCGGAAAAATTACCTCATCCCCCTTTA
TCCTTATTTTTACCAGACCTTCACCCTCTTTTTTTAAAAAAATCTGAACC
AAAGGGGGAGAAAAAAAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_g21.b1 MSMg01no401_g21.b1 CHROMAT_FILE:
MSMg01no401_g21.b1 PHD_FILE: MSMg01no401_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:03 2005
         (464 letters)



>mm_chr8_43815777_43816640
          Length = 864

 Score =  882 bits (456), Expect = 0.0
 Identities = 459/460 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctcagacttttctctttcaataacaactaattacaaaagcactgaatacccact 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcagacttttttctttcaataacaactaattacaaaagcactgaatacccact 264

                                                                       
Query: 65  ctcccttaatcttaatgctagaggcaacacacagacgacacacaaactaatactaatttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcccttaatcttaatgctagaggcaacacacagacgacacacaaactaatactaatttt 324

                                                                       
Query: 125 catttattaagactataaatattccccatagacattttaaaagttacattgttaaataag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catttattaagactataaatattccccatagacattttaaaagttacattgttaaataag 384

                                                                       
Query: 185 ccccaatgacaaaacaaaataccaccataatctaaatggtgtgcaataaatatttgatca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccaatgacaaaacaaaataccaccataatctaaatggtgtgcaataaatatttgatca 444

                                                                       
Query: 245 agaaattaaattaatgccctcattaaaataagtctctttgtttttatttgcttatgtggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaattaaattaatgccctcattaaaataagtctctttgtttttatttgcttatgtggc 504

                                                                       
Query: 305 aaacttattttcagttagaggtgttggttactgccaaggtatgtgtgccactactgtacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaacttattttcagttagaggtgttggttactgccaaggtatgtgtgccactactgtacc 564

                                                                       
Query: 365 cttatgggtattgtggcaagctcttcattattgtggttcataggcatcaaagttatatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttatgggtattgtggcaagctcttcattattgtggttcataggcatcaaagttatatgt 624

                                                   
Query: 425 gagcattagttgctttcttcctttggaagctcacatggtg 464
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagcattagttgctttcttcctttggaagctcacatggtg 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no401_g21.g1 MSMg01no401_g21.g1 CHROMAT_FILE:
MSMg01no401_g21.g1 PHD_FILE: MSMg01no401_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:03 2005
         (478 letters)



>mm_chr8_43850945_43851822
          Length = 878

 Score =  924 bits (478), Expect = 0.0
 Identities = 478/478 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaatgtttcatgcagagcagaacaatacatttagaattggttagattggcagagtctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tcaatgtttcatgcagagcagaacaatacatttagaattggttagattggcagagtctca 619

                                                                       
Query: 61  atgcaggtataaacatttagctccaaccatttccctggccacagtagaagaggatatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atgcaggtataaacatttagctccaaccatttccctggccacagtagaagaggatatgaa 559

                                                                       
Query: 121 taattctttctcaatttagtcatcctgcaatgaatacagatttcaaaaaattatgtgaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taattctttctcaatttagtcatcctgcaatgaatacagatttcaaaaaattatgtgaaa 499

                                                                       
Query: 181 attaatgttaaataaaataagtttgcaaaagttgattactcagcttgtatatgttgaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attaatgttaaataaaataagtttgcaaaagttgattactcagcttgtatatgttgaaga 439

                                                                       
Query: 241 tttcttattttaaaatatattccttgcttttaatttttcatcaatgctatatgtgatttt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tttcttattttaaaatatattccttgcttttaatttttcatcaatgctatatgtgatttt 379

                                                                       
Query: 301 ttaaattgatatatctgaagactagacagtatactacttggtaattagcgaatggcatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttaaattgatatatctgaagactagacagtatactacttggtaattagcgaatggcatct 319

                                                                       
Query: 361 gaatgaatgaagattttaatgatatatgttattactctcacatgctttaggttgaagact 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaatgaatgaagattttaatgatatatgttattactctcacatgctttaggttgaagact 259

                                                                     
Query: 421 aataattaccactgctttctttctctgtatatctgaatatagtcttatctctcaagac 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aataattaccactgctttctttctctgtatatctgaatatagtcttatctctcaagac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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