BAC Information

Click to search

BAC

Clone NameMSMg01-401P09
Chromosome8 (Build37)
Map Location 72,969,855 - 72,970,093
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC670593, EG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1
Downstream geneKlhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401P09.T7 (MSMg01no401_p09.b1)MSMg01-401P09.TJ (MSMg01no401_p09.g1)
ACCAG501222AG501223
length744743
length of high quality
(start - end)
67 (248 - 314)239 (326 - 564)
definitionCHROMAT_FILE: MSMg01no401_p09.b1 PHD_FILE: MSMg01no401_p09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:42 2005CHROMAT_FILE: MSMg01no401_p09.g1 PHD_FILE: MSMg01no401_p09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCATCATAAATTGCGGCCGCTAAACGAANCACTATTTCCGACCAGGCGCG
GAANNCGGNCAGTGACAAGAACCGCAGAGAGGACNCGAAGGCNNCACAGA
GAAGCACNCAGGAAACTTTGGACGCNAAACAGCAGGCAAGCCNNNCCAAC
AGAAGACACATATGGCTGGCGCCTACCCAGAAGGNGGAGGNGGNNAACAG
CCGGGNGACNCGGGCNGNCGGCAGGGNCAGGCCAGNCCNAANGGNGGACA
TTTTGTCTCTTGGNCAACAGGACCCATCTTTATTGAAGTGTCCATATGCA
CTCTGTAAAGAGACTCAATTTTTTTTTGCCACACGCNNCNNNGGACACAG
GGGACCAGGTTAATTATCAGCACAACGGCTTTTTCCCCCCAAATTGTGCT
TACATATGGCTACAACAACCTGTCCTGTGTCAGACTCCAGCTGACAAGTT
CTGTTAAAAGGGATTTCCCTCCTGCCTCACCAGGGTTGTTTCTCTGCTGG
CCCTGGCGTTGGCAGACACCCTCACAGAATTATACATAATTATTGTAGAT
AAACAGGGCATGGTTGAAGGCCTGGTGGCTACCACGCTGCACCCCCACAG
CATTGCATCTCTGTGTCCGAGTCTAGACGATCCCTGTGCAGAGGGATCTG
TATTATTTCTTTTATCTGCAGGAGCTTGGCCTCTCCTATACCATGTACCC
TGCATTGTTCCTGCTTCCGCTTGTTCGCTGCCCCCTGTGCCTTN
NACTATGAACTGGTAGGNCTGGNGGNCGCCTGTTTCAAACATAGAGGNGA
CACANAGAAGTTTCAAAAAACATCATTCCTGACCCACATTGGTAAAAGAG
AGAACTGGCTCCTGTATGTTGTCCTCTGACCTCCACATGTGTGGCACATG
TGCACACACACACACACACACACACATTCACAATATAAAGAGGGGGAAAA
ACACCTTTAAAGAGGCTAGGGCTGGAGAGATGACTTAAAAGTTAAGAGCA
CTGGCTGCTTTTACAGAGAACCTGGGTTCTATTTCCAGTACCCAGATGGC
AGCTAAACAGTATGCACTGCTANTCTTGGACCTGGCTTTTCCTGACTGCC
CAGCATCCAGAATTCTGTACACCTTTGGGGGTTTGCCCACATGACTACAT
GTCCCCCAAGGCAATGTTCAGGGTCAAACTATTGACTCCCATTTCCCATT
AGCTCCTTTGCTCTAGGCTCAGCCAGGGACTCTAGTTCTTTCTTTTCAGG
GAGAAACATCCATTCTTCACGTTGGCCTTGGCCTTGCATCTCTCTGCTGT
GTGTGTGGCAGATGGCCACTGCAGCAACATAAGGGCTGTGGTGGCCTGCA
TATGCTTGGCCTGGGGAGTGGTACTGTTTGGAGGTGCGCGCTTGTTGGAA
TAGGTATGTCACTGTGGCCATGGGCTTTAAGACCCTCATCCTAGCTGCCT
GGAAGCCAGTCTTCTAGTGCGCTTCATATAAAGATGCACAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_p09.g1 MSMg01no401_p09.g1 CHROMAT_FILE:
MSMg01no401_p09.g1 PHD_FILE: MSMg01no401_p09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:42 2005
         (239 letters)



>mm_chr8_72969655_72970293
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttggacctggcttttcctgactgcccagcatccagaattctgtacacctttgggggtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttggacctggcttttcctgactgcccagcatccagaattctgtacacctttgggggtttg 260

                                                                       
Query: 61  cccacatgactacatgtcccccaaggcaatgttcagggtcaaactattgactcccatttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccacatgactacatgtcccccaaggcaatgttcagggtcaaactattgactcccatttc 320

                                                                       
Query: 121 ccattagctcctttgctctaggctcagccagggactctagttctttcttttcagggagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccattagctcctttgctctaggctcagccagggactctagttctttcttttcagggagaa 380

                                                                      
Query: 181 acatccattcttcacgttggccttggccttgcatctctctgctgtgtgtgtggcagatg 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatccattcttcacgttggccttggccttgcatctctctgctgtgtgtgtggcagatg 439


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)