BAC Information

Click to search

BAC

Clone NameMSMg01-402B20
Chromosome8 (Build37)
Map Location 36,794,279 - 36,920,022
singlet/doubletdoublet
Overlap geneLOC100041572, Gm501, Cldn23
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1, Mfhas1
Downstream geneLOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402B20.T7 (MSMg01no402_b20.b1)MSMg01-402B20.TJ (MSMg01no402_b20.g1)
ACCAG501339AG501340
length738730
length of high quality
(start - end)
352 (70 - 421)438 (77 - 514)
definitionCHROMAT_FILE: MSMg01no402_b20.b1 PHD_FILE: MSMg01no402_b20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:54 2005CHROMAT_FILE: MSMg01no402_b20.g1 PHD_FILE: MSMg01no402_b20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,794,279 - 36,794,630)(36,919,585 - 36,920,022)
sequence
TTTTTCAATAAXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCG
CGGAATTCATTGCTTTGCGCTTTGTGCAAAGGCATGTATTCACACTTAGA
CTATACAGATCTACCAGCTAAGATTCCAGTAGGAGACACAGACACTCCTT
AAGATGGCTTTCTGTCTCCTGAAAAGGGACTCTCAGCCCTTATAGGGCAG
AGTTCAGTGGATGAGGGCAGAAGCTCTGGGCGAGTATCCCAGAGTTCAGA
GCCTGAGTCTGGTGGGAAGAGTCTGCTTTGGTCACTGGAACTATGAAGAA
GAGTTGCAGAGAGTTGACTGCATTTAAGCAGCCCCTCCTTCGTCCAGAGG
GCTTGCCAGATGGTAAATATTCTGACCTTTTCTCCTGTAGGGTACCCCCA
AATAGTAGTTCAGGAGATAAAGAGCCTATAGTAGAGACTATACCTGCTCA
GTCTGTCTGACAGAGTGGAAGGACAGAAGGGTTGTTTGCACTCATTTGTG
GTCCCTATTTAAATAGTCTAGCCTATAGTAACAGGTATTCCAGTCACAAT
TATTCCCTGTATTCTTAACCCCCCCCCAATCATTTGGCCCTATGATTTAA
AATGATCTTTACTTTAGAATATACCCTTTTCGAATAATGTATTTTTCTTT
GGCAATGATAAGTAGCACAGTTCCCCAGTTCTTCTAGGCTAACCCTGAAC
CCTTCCTGTGCCCTTCCACCTTGGAATGAGACCCCATN
NCCCGATGATAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGCGCTACTGAAGATTCTAAT
ATTATGGCCAGGTTCTGAACTGGTGTAGCTGCTGTGAGAAACGGTTTGGC
TCCTCAAAAAAGCTGAATACAAGATTTCCTTATGGTCCAGCAACTCTGTG
CTTCTGCAGAAATCAAAAGGACTGGAAACAAAAGGCCTCAGGTTGATGTG
CGTGCACACACATTTGGGTACTGCGTTAATTACTTTCACATCACTGTGGC
CAAGCACCTTGCAGAAGCAACGTAAAAGAACAGAGACTTACTATAGCCCA
TAATTCGGAGGGTCTATGGTGAGAGGGGAGGCATGCAGCTGGCATGGCCA
GGCTAAGTGATGGGAGTCTGCTCTGGAAGTTTCTTGAAGTGTTGACTAAG
AGACAGAGTGCCCCAGCTCAAAGTGGACTCTGGGTATAACCCATGAAGAC
CAACCTCAAGGACCCAGGTTGACCTAATCCTTAAAAGTTCTACAACTTCC
CAAAACGATGCCACGAGCTGGAGACCAAGTATTTTCAACACAGGAGCCTG
TGAATGGCGTTCCATATTCAAGCCATAAGAAGTACCGTCTTTTACTGCGA
TAGAGAGAGAGAGAGACTCTAGTACGTATCTCTAGGTAAATGGATAAAAA
AACTCCATGGCTGGGAAAACATATTATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_b20.b1 MSMg01no402_b20.b1 CHROMAT_FILE:
MSMg01no402_b20.b1 PHD_FILE: MSMg01no402_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:54 2005
         (352 letters)



>mm_chr8_36794079_36794830
          Length = 752

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttgtgcaaaggcatgtattcacacttagactatacagatctaccagctaagattccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttgtgcaaaggcatgtattcacacttagactatacagatctaccagctaagattccag 260

                                                                       
Query: 61  taggagacacagacactccttaagatggctttctgtctcctgaaaagggactctcagccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggagacacagacactccttaagatggctttctgtctcctgaaaagggactctcagccc 320

                                                                       
Query: 121 ttatagggcagagttcagtggatgagggcagaagctctgggcgagtatcccagagttcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatagggcagagttcagtggatgagggcagaagctctgggcgagtatcccagagttcag 380

                                                                       
Query: 181 agcctgagtctggtgggaagagtctgctttggtcactggaactatgaagaagagttgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcctgagtctggtgggaagagtctgctttggtcactggaactatgaagaagagttgcag 440

                                                                       
Query: 241 agagttgactgcatttaagcagcccctccttcgtccagagggcttgccagatggtaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagttgactgcatttaagcagcccctccttcgtccagagggcttgccagatggtaaata 500

                                                               
Query: 301 ttctgaccttttctcctgtagggtacccccaaatagtagttcaggagataaa 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgaccttttctcctgtagggtacccccaaatagtagttcaggagataaa 552


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no402_b20.g1 MSMg01no402_b20.g1 CHROMAT_FILE:
MSMg01no402_b20.g1 PHD_FILE: MSMg01no402_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:54 2005
         (438 letters)



>mm_chr8_36919197_36920034
          Length = 838

 Score =  847 bits (438), Expect = 0.0
 Identities = 438/438 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggcgctactgaagattctaatattatggccaggttctgaactggtgtagctgctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 agaggcgctactgaagattctaatattatggccaggttctgaactggtgtagctgctgtg 767

                                                                       
Query: 61  agaaacggtttggctcctcaaaaaagctgaatacaagatttccttatggtccagcaactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 agaaacggtttggctcctcaaaaaagctgaatacaagatttccttatggtccagcaactc 707

                                                                       
Query: 121 tgtgcttctgcagaaatcaaaaggactggaaacaaaaggcctcaggttgatgtgcgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tgtgcttctgcagaaatcaaaaggactggaaacaaaaggcctcaggttgatgtgcgtgca 647

                                                                       
Query: 181 cacacatttgggtactgcgttaattactttcacatcactgtggccaagcaccttgcagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 cacacatttgggtactgcgttaattactttcacatcactgtggccaagcaccttgcagaa 587

                                                                       
Query: 241 gcaacgtaaaagaacagagacttactatagcccataattcggagggtctatggtgagagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 gcaacgtaaaagaacagagacttactatagcccataattcggagggtctatggtgagagg 527

                                                                       
Query: 301 ggaggcatgcagctggcatggccaggctaagtgatgggagtctgctctggaagtttcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggaggcatgcagctggcatggccaggctaagtgatgggagtctgctctggaagtttcttg 467

                                                                       
Query: 361 aagtgttgactaagagacagagtgccccagctcaaagtggactctgggtataacccatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 aagtgttgactaagagacagagtgccccagctcaaagtggactctgggtataacccatga 407

                             
Query: 421 agaccaacctcaaggacc 438
           ||||||||||||||||||
Sbjct: 406 agaccaacctcaaggacc 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)