BAC Information

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BAC

Clone NameMSMg01-402C06
Chromosome8 (Build37)
Map Location 37,249,800 - 37,250,084
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r3b, Thex1, Mfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e
Downstream geneLonrf1, EG544878, 6430573F11Rik, Dlc1, LOC100042892, A730069N07Rik, AI429214, LOC666877, LOC100041616, 1700016D18Rik, LOC641121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402C06.T7 (MSMg01no402_c06.b1)MSMg01-402C06.TJ (MSMg01no402_c06.g1)
ACCAG501358AG501359
length776790
length of high quality
(start - end)
247 (69 - 315)285 (72 - 356)
definitionCHROMAT_FILE: MSMg01no402_c06.b1 PHD_FILE: MSMg01no402_c06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:56 2005CHROMAT_FILE: MSMg01no402_c06.g1 PHD_FILE: MSMg01no402_c06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAA
TTCATAATTTATTACAATCAATGCAGGTTTACAGTTTCCTATTTTAGACA
GTGGATTCGGAGTCACCAAGGTTACTGTCCTCCTTGAGTTTCTGTCTTCA
TTGATAAGACACTGACCAGAAACAACTTGGGGAAGGGTACAGTCTGTCAT
CAAGAGAAGCCGAGACCACAGAGGGAAGCTGCTTACTGACTCGTTCTTCA
TGCCTTACTTGTGTGATGTCCTTATATCTCTCAAGACCATTCACCCAGCG
GTGGCACCATCAGAACTATGTACCACAAGGGTGCCCACCCAATTGGGTGG
GTACAATTCCTCAGCTGACATTCCCTATTTCCAGGGAACTCTAGCTTGTC
AAGTTGGCAAAAACTAACCAGCAGCTGCTGAAACGCACATTTGTCTCATA
TATGTTCAACAAGGACTTTTAAAGTTTGTCCCTTTAATGTGTCACCGTTC
TTCTTTGAACAACTCTCGAGGTTTTTAACGACCTTTTAAGGATTTGGAAT
AGTCCTGCTTGACAGATCTTATGAATTCACTGTTATCTACAGTGACCTTG
ATTGGCACATCGTTTATTATTTATTTTCGCCTTACATGGGCCAACGTGCC
CTCGATGTTTCTATTTTTCGCCTCAGCTATTGGGTCACCACCTGGGCAGC
TGATATACTATGTCCGCCCCTATTTTTTTTCCGCTATGCTGGTCCTTCTC
TTTTATTTCCCTCTTACGTTCCTTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGACATTAATAAGGCCAGAGACATAAACC
AGGCCCCTCTGAGACTGGGGTGGGGGAGATCTCTTCTTTCAGAAAGGAGT
GGCTCACACCAGTCTGGGATTCTTACACCCCAAATATTAAACCTTGCACT
TTGGTTTGTTATAGTTACTGATGTCTTTAAAAAAAATCAGAAATATATTT
AATATACACCTTGCACCTAATGTGGGTTCTAGTAAATTCTCCCATGGCCT
GGAATCACTTTCATCAGATTGCGGGTCCTCCTACTTGGAGCTCAGCAGTT
TTCCCACGGTAGAGGGATGGTAGATGTGACTGTGGATTCTATAATCGTCT
CTGGCACTTATCCCAAGTGCATACTCATCTTGTGTCTTGGGTGTTGTTTA
TAAACGATGCCTTTTCTGCCGCCAGTTGTTCCATGTTCATACTGTTCTTA
TACCGATCGTCATTTCTCCTTTTTTTGCCTTCTCTTACTTCAAATTTTAT
ATTTTCCACTTGTCTTTTTCTCCTCAGTTCCCCTCACTTTTTTTTCCATC
TCTATTCACTTTCATTCCTTTCTACCTCCTATATCTCTATCTTTTATTGT
CCGACCTCTACCTATATCTTTCACACAACTCCTTCCAATATTTTTATACC
ATATCTTCCTCTTTTATTGTCTCCCCTCCCTATTCTATTTTGTATTTCCC
CTCCTATACTTTTCTTTCTCCCTTCCCCCTCTTTTTTACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_c06.g1 MSMg01no402_c06.g1 CHROMAT_FILE:
MSMg01no402_c06.g1 PHD_FILE: MSMg01no402_c06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:56 2005
         (285 letters)



>mm_chr8_37249600_37250284
          Length = 685

 Score =  551 bits (285), Expect = e-161
 Identities = 285/285 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agacattaataaggccagagacataaaccaggcccctctgagactggggtgggggagatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agacattaataaggccagagacataaaccaggcccctctgagactggggtgggggagatc 260

                                                                       
Query: 61  tcttctttcagaaaggagtggctcacaccagtctgggattcttacaccccaaatattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttctttcagaaaggagtggctcacaccagtctgggattcttacaccccaaatattaaa 320

                                                                       
Query: 121 ccttgcactttggtttgttatagttactgatgtctttaaaaaaaatcagaaatatattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttgcactttggtttgttatagttactgatgtctttaaaaaaaatcagaaatatattta 380

                                                                       
Query: 181 atatacaccttgcacctaatgtgggttctagtaaattctcccatggcctggaatcacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatacaccttgcacctaatgtgggttctagtaaattctcccatggcctggaatcacttt 440

                                                        
Query: 241 catcagattgcgggtcctcctacttggagctcagcagttttccca 285
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catcagattgcgggtcctcctacttggagctcagcagttttccca 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)