BAC Information

Click to search

BAC

Clone NameMSMg01-402G13
Chromosome8 (Build37)
Map Location 15,980,586 - 15,980,869
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneArhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402G13.T7 (MSMg01no402_g13.b1)MSMg01-402G13.TJ (MSMg01no402_g13.g1)
ACCAG501563AG501564
length694862
length of high quality
(start - end)
284 (72 - 355)75 (100 - 174)
definitionCHROMAT_FILE: MSMg01no402_g13.b1 PHD_FILE: MSMg01no402_g13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:17 2005CHROMAT_FILE: MSMg01no402_g13.g1 PHD_FILE: MSMg01no402_g13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAATCTAAATTAGTGTCGCTATACGACTCCTATTTCCACACATCCGCG
GAATTCTTTCTGTTCCCAACCAGGCAGGAAACCAGGCCAGGCATAGTCGG
TCGTCTTGTATTAGTCTTCAATTTTTAATCCATTTTTCGTGTGTGACTTG
AGAACATGTCAACTGGAGACTAGTTCTAACTAATGACCTCATGTCTGCCA
ACATTTGGAGTGATAGGAATGGTCAAGTTCAGGCCATGCTTCAAAGGACA
GTTCTATCACTCACCAGGGTACAAGGAATTTTCCCCAAGGGGACATCATT
TCCCTATATCTTGTAATATATTAAATAATGTATTTCCCCTGCCCCTGCTT
AGTGCAGACAAGGACGACAAATGTGGCTCATGATTGAGGTAATAGTGAGG
GTGTGTGCTCAAAGTCATTTCTCATAAAATAGCTGGACTAAGTGTGAAGG
GAAAGGATTTTTAACCCAAGAAAATTATGAGTCCCCCAGCTGGAAGTTGG
CCCCAGAAATCCCCTGTGACCCTGGCATGAAAAAAAATTTTTTATAGGTC
CAAACCAGTGTTTTTTCTCGTCAAAATGTGAAAACTTTGTTTTTGTCCCC
ATAACACAAAAATGGGGCGAAAAAGGGGAAAAAAAAAAAAAATTTTCTCG
GCGAATTTGGGTCCTTTCCTATTTTTTTTCGTCCCTTAGTGGGG
ACCATGCTGTGTGAGGCCGGGAGGGCGCCTGTTTTCAAAXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGTTTCTTTGAGAAATACAGGAATAT
CATGGGAACATATTTCTATTTTGATTCCCCAAATGTTTTCATTTCGATTT
TGATTTTGCCAGTTACACATAGTTTCTGCAGTTGTGTGACATTTGGAATT
CCGGGGACTTATTAGCAGGCATATAAATGTTAGGGTCTTCTAAAGGCAGG
CTATAGGTTGGTGGTTGTTATTTGTTGCTGGCGGTCACGCTTTTATTAGC
CCCTTCGCCATTATTTTTTTTTTTTCTAATTAATACCTTTTATCTCCCAC
CCGCTAATCATCTTATTTTGCTTCTCGCATTCTCTTATACTCCTATACTA
GTTTATTTTTTTATCATCCTTCCCTCTTTCTTGCATACTTGATCTCATAT
TTCCAGCAATCTCTCTTTCACTCCACATTGTTCTAATCCTTTTTTATTCT
TTCTCCTATCTTACCTTGACTATCCTATTTTCTTAAGTTTTTTTCTTCAT
TCTTTCTTTTCCACATGCTCCGACTTTAATTCTCTCCACCTCCCTCTTTT
CCCTTTTCCCCTTTCTCCCCTTTTCACTCCTTCCTCTTTCTTTTCTCCCC
CTCCCATCCTTTTCATCCCTCCTCTCATTCTGAACATCTTCTTAATTTTT
TACTTTTTTATTTCTTTCCTCCCCCCTCCCTTATTACTTTTCTCTTCTTC
TCTCTCTCTCCTATTTTCTCCCTCTTTCTTTTCCCCTCCATCCTCCTTCC
CCTTTTTCCCCGTTTCACTTCCCTCTTCTCCCCTACTCTCTTCTTTCTTC
TCATCCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_g13.b1 MSMg01no402_g13.b1 CHROMAT_FILE:
MSMg01no402_g13.b1 PHD_FILE: MSMg01no402_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:17 2005
         (284 letters)



>mm_chr8_15980386_15981069
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcaggaaaccaggccaggcatagtcggtcgtcttgtattagtcttcaatttttaatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aggcaggaaaccaggccaggcatagtcggtcgtcttgtattagtcttcaatttttaatcc 425

                                                                       
Query: 61  atttttcgtgtgtgacttgagaacatgtcaactggagactagttctaactaatgacctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 atttttcgtgtgtgacttgagaacatgtcaactggagactagttctaactaatgacctca 365

                                                                       
Query: 121 tgtctgccaacatttggagtgataggaatggtcaagttcaggccatgcttcaaaggacag 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 364 tgtctgccaacatttggagtgataggagtggtcaagttcaggccatgcttcaaaggacag 305

                                                                       
Query: 181 ttctatcactcaccagggtacaaggaattttccccaaggggacatcatttccctatatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttctatcactcaccagggtacaaggaattttccccaaggggacatcatttccctatatct 245

                                                       
Query: 241 tgtaatatattaaataatgtatttcccctgcccctgcttagtgc 284
           ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgtaataaattaaataatgtatttcccctgcccctgcttagtgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)