BAC Information

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BAC

Clone NameMSMg01-402H06
Chromosome8 (Build37)
Map Location 113,892,508 - 113,892,749
singlet/doubletsinglet
Overlap geneFa2h
Upstream geneHydin, LOC672398, Vac14, BC060632, 2010004A03Rik, Sf3b3, Cog4, Fuk, St3gal2, Ddx19a, Ddx19b, Aars, Exosc6, Mrcl, 4930402E16Rik, 9430091E24Rik, Glg1, Rfwd3, LOC547023, Mlkl
Downstream geneWdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402H06.T7 (MSMg01no402_h06.b1)MSMg01-402H06.TJ (MSMg01no402_h06.g1)
ACCAG501597AG501598
length786838
length of high quality
(start - end)
242 (70 - 311)156 (78 - 233)
definitionCHROMAT_FILE: MSMg01no402_h06.b1 PHD_FILE: MSMg01no402_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:20 2005CHROMAT_FILE: MSMg01no402_h06.g1 PHD_FILE: MSMg01no402_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATTTGCGGCGNTATACGACTCACTATTTTTCAAACATCCGCGGATTCAC
TAAAAGTCTCATGAACTGGCACAACTGTGAGGTTTTTTTTTTCTCTCTCT
CTCTTAATTAAATCATTTGCCCTCCTGGTCTCCCACGGCTCCCTTGGTAG
GTCACAGCAGTGTGTGCAGTGGTGGCCACTCCATGACAGGTTTGTCATGG
CACCTGATACTGCCATGGTGCCCAAGAGGAAGGTTATCTGGGTTGAAGGA
GCCAAGGTGGAGCCCAGGAGCCACTCCCTGGCACTGTTGGGGATAGCGGG
AGACAATAAATCTCTTGTTTAAAACTGTAAACGGAAGGGAAGAGTGAAAA
ACTCATCTGAAGGAGGAAGACCCACTTCTAATCCCAATCTCTGTAGGAAG
ATACACCTGGGATCCAGAGCTTTTAAAGTGGAAGATAAACCTTTATAACC
TGGGCCACACCTTCTGCAGACAGCCTATATAAAGTCACGGAAGAAGGAAA
CTTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCCTTCAAATTTCTCCCTTTATTAAGTCCTTTTCTCCTCTT
GCTTTTCTATTTTATTTTTTAAAATTTTTTTCCCATTTATTTAATTATTT
CCTTTCTTTTCCCTCTCTCTAAATTTTTTTTTTCCATTGATCTCTCCTCT
TTTCCCTCTCCCCTTTATTCCACTATACATTCTTCTCCTCATATCACCAT
ACGAAAACTCTTCTTCCTCCTTTTCATTTAGTTTAN
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXGCTTGGTTTTCTGCATTATGAGT
TCCTAGTCAGCCTAAGCTAGACCTTATAGTTAGACCTTGTTAAACAAAAA
CAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAAAAACAGGGAAG
GGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGCCCCCCCTTTTTTTT
TTCTTTTTCTCCCTTCTTTCCTCTCCTCCCTCTCTTTTCTTCCCCGTCTT
CGCCCCCCCCCCCTTTTTTTCTGCTTTCCCCCCCCCCCTTTCTTTTTTTT
TTCCCCTCCTTGTTTTTTTTTTTTTTCTTCCTTCCTAGTTGTTTTTTTAT
CTTTTTCTCTCCACCTATTCACCCTCCTCTTCATTTTCCTTCATTTTTTA
TCTTTTACTTTTCTCTCCACCTTCCTTCTTTCTTCTTCCTCCTCCCCTTA
TCTCTCTTTTTTTATTTTATCATCTCATTTATACCACCCCCCCACATTAA
TCCATGATCAAACCTTTCCCTCTTCTTTTATTTATTTCCCTATTCCTCAC
CCCGTTTTTACCTATACTATCTTCCATCTTTTATTTTCTCTCTTATTTTT
TCTTACTACCCTCCTCTACCCACTTTATCCCTCCCTTTCTTTTTATTAAA
CCACTACTTCCTTTTTTATTTTCTACCACGCCCAATCTTTTTATTACCAC
TCCTTCTCCCCCTCCTCCTGTAGTTCCATGCTCTTCTTCCTTTTTCTTGT
TTTCTCTTCTCTCTATTTCTATGCTATTCATTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_h06.b1 MSMg01no402_h06.b1 CHROMAT_FILE:
MSMg01no402_h06.b1 PHD_FILE: MSMg01no402_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:20 2005
         (242 letters)



>mm_chr8_113892308_113892949
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacaactgtgaggttttttttttctctctctctcttaattaaatcatttgccctcctggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacaactgtgaggttttttttttctctctctctcttaattaaatcatttgccctcctggt 260

                                                                       
Query: 61  ctcccacggctcccttggtaggtcacagcagtgtgtgcagtggtggccactccatgacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcccacggctcccttggtaggtcacagcagtgtgtgcagtggtggccactccatgacag 320

                                                                       
Query: 121 gtttgtcatggcacctgatactgccatggtgcccaagaggaaggttatctgggttgaagg 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttgtcatggcacctggtactgccatggtgcccaagaggaaggttatctgggttgaagg 380

                                                                       
Query: 181 agccaaggtggagcccaggagccactccctggcactgttggggatagcgggagacaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agccaaggtggagcccaggagccactccctggcactgttggggatagcgggagacaataa 440

             
Query: 241 at 242
           ||
Sbjct: 441 at 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)