BAC Information

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BAC

Clone NameMSMg01-402K16
Chromosome8 (Build37)
Map Location 3,278,576 - 3,278,898
singlet/doubletsinglet
Overlap geneInsr
Upstream geneEG664801, EG209786, D630014A15Rik
Downstream geneA430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402K16.T7 (MSMg01no402_k16.b1)MSMg01-402K16.TJ (MSMg01no402_k16.g1)
ACCAG501760AG501761
length773733
length of high quality
(start - end)
326 (47 - 372)393 (75 - 467)
definitionCHROMAT_FILE: MSMg01no402_k16.b1 PHD_FILE: MSMg01no402_k16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:39 2005CHROMAT_FILE: MSMg01no402_k16.g1 PHD_FILE: MSMg01no402_k16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTATTATTGCGGGCGCNAAACGACTCACTACTCCGAGAGGATCCGCGG
AATTCTCCCTTTGCCCTGAGTAATGGGGACAACCCTTCCCATTGCTCCAT
ACAACTTAGAGCCCCCCAGGCCCCACCAAGGAGTCAGGGTTACAGACACC
CATTTCACCACTCCAGCAATATAGTCCTTTCACGAGAGTTGTGGACATTT
CTCGTTCTTCTTCCATCAACCTAGAGCCCCCTCTCCACGGACTGAGGGTC
GAGGACTCCCGTAGCGTCCTTGTGTCTATGAAGAGTCCCCTCCCTATAGT
GATCATCTTTACACTGGTGAAGGGGAAGAGTGGGTTTGGTGGTCCTGGCC
CTGCGCGAAACCCCGGCTGACCTTGGCCTTTGCTCACTGGGCTTGCGGCT
CTGTACTCCGCGTGTGCCCATCTCGGGTCTGATGATTCTTGCCCCAGCGG
CCGTCCAGTCTTCGGTTGTCTGTTCCTAGTGTACTTCTCTACTGCGTCCG
CTCTTCTTTTTTACCCCATTTCTAGCCTCTTAGGTTCTTTGACGTTGTTT
TAAACTACTTTTTGGTTACTGCCATTGTTTCTTGATTTTAACCCCTTGAA
TTTATTTTTAATCCTTTCCCTATCGACTCCCCCCCTCCTACCATATTACC
TTTTTTTAGGCCCCATTATTTTCTTTTGCTACCATGCATATGCTTTATAC
ATTTTTCCCTTTTTCCTTTTTTTCTTCGTTTACTCCCATTACCTCTTTCT
TTCTCCCTTTTCGCCCACCTGCN
AACATGCATTGGGAGGCCGGGCGGCGCCTGGCTGCAGAATGGAGGTGACC
TATAGAAGTCCCGCGAAATTCAGAATTTGATACAAAGAGAACTATACAAA
GAATCTGTGATACAATAGCCTGTGTGTTGATTAAAATCAACAAGGTAGAC
AAATGCTTAGCCAAATTAACTGAAAGGTAGAGAGACAATACCCAAAATAG
CAAAATCAGAAATGAAACAGGAGAAATAACAATGGACTCTGAGGAAATTG
AAAGAATCACTAGGTCTTACTGCAGAAGCCTGTACTGCAAAAAATAGCAA
TATCTAAATGATTTGTTTAACATACACAGTTATCAATTATCAAAGTTAAA
TGAAGATCTGGTAAAGTAACTAACAGGTCTATAGCCCCTAAGGAAATAGA
AACAGTCATCAAAAGTCTTCCACTCCAAAAAAGCCCAAGGCCAGAAAGTT
GTAGTGCAGAATTCTACCAGATATTCAAAAAAGAGTTAGTGCAATACTCC
TCAAATTATTCATAAAGTAGAAACAGAAGAAACATAGCTAAACTCATTCT
ATGAGTTCATAGTCACCCTGATATAGAAACCACACAAAGACCTCACAAAG
AAAGAGGAATTCAGTCCAATTTCTCTTTTTTAACCACTCCCTGTAAATGT
ACTTATCTTCATAATAAGGAAAAACATGTCTTCCCTTGTATATTTAAAGG
TATAAAACTAGATACTGTTATAGGACAAAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_k16.b1 MSMg01no402_k16.b1 CHROMAT_FILE:
MSMg01no402_k16.b1 PHD_FILE: MSMg01no402_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:39 2005
         (326 letters)



>mm_chr8_3278373_3279098
          Length = 726

 Score =  563 bits (291), Expect = e-165
 Identities = 315/323 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctccctttgccctgagtaatggggacaacccttcccattgctccatacaacttag 63
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattctccctttgggctgagtaatggggacaacccttcccattgctccatacaacttag 467

                                                                       
Query: 64  agccccccaggccccaccaaggagtcagggttacagacacccatttcaccactccagcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 agccccccaggccccaccaaggagtcagggttacagacacccatttcaccactccagcaa 407

                                                                       
Query: 124 tatagtcctttcacgagagttgtggacatttctcgttcttcttccatcaacctagagccc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 tatagtcctttcacgagagttgtggacatttctcgttcttcttccatcaacctagagccc 347

                                                                       
Query: 184 cctctccacggactgagggtcgaggactcccgtagcgtccttgtgtctatgaagagtccc 243
           |||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 346 cctctccacggactgaaggttgaagactcccgtagcgtccttgtgtctatgaagagtccc 287

                                                                       
Query: 244 ctccctatagtgatcatctttacactggtgaaggggaagagtgggtttggtggtcctggc 303
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 286 ctccctatagtgatcatctttacactggggaaggggaagagtgggtttggtggccctggc 227

                                  
Query: 304 cctgcgcgaaaccccggctgacc 326
           |||||| ||||||||||||||||
Sbjct: 226 cctgcgtgaaaccccggctgacc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)