BAC Information

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BAC

Clone NameMSMg01-402L10
Chromosome8 (Build37)
Map Location 82,983,274 - 82,983,578
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666378, LOC666388, LOC666392, Otud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075
Downstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402L10.T7 (MSMg01no402_l10.b1)MSMg01-402L10.TJ (MSMg01no402_l10.g1)
ACCAG501796AG501797
length745746
length of high quality
(start - end)
585 (45 - 629)305 (72 - 376)
definitionCHROMAT_FILE: MSMg01no402_l10.b1 PHD_FILE: MSMg01no402_l10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:42 2005CHROMAT_FILE: MSMg01no402_l10.g1 PHD_FILE: MSMg01no402_l10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAGGATCCGCG
GAATTCAAGGCCTTTCCCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCAGCATCAAAGTAAATGGTGAGAAGCTTGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGTCCACTCTATCCCTACCTATTCAACATTG
TACTTGAAGTCCTAGCCAGAGCATTAGACAACAAAAGGAGATCAAGGGGA
TACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGAAGATGATATG
ATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAGCCT
GATAAACAGCTTCAGTGAAGTAGCTGGATATAAAATTAACTCAAGTCAAT
GGCCTTTTTCTACACAAAGGACAAACAGGCTGAGAAAGAAATTAGTGAAA
CAACACCCTTCTCAATAGCCACAAATAATATAAAATACCTAGGCGTGACT
CTAACTAAGAAAGTGAATGATCTGTATGACAAGAACTTCATGTCTCTGAA
GAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCAT
GGATCGGCAGGATCAATATAGTAAAAATGGTTATCTTGCCTAAAGCAATC
TACAGATTCTATGCAATTCCCATCAAAATTTCCACCCTATGTTTTCATGA
ATTAGAAAGGGCAATCGGCAGAATCATCTGGAATAACAAAAAACG
TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAAAGGCGTGTATATCTGCATAACTAAGT
TCGCCTTTGGTAAGATGGTACTTTTTTCTTCCGTAGTGCTGAGGAGGAAA
CTTTGAACTAGTTGCTGAGCCTGAGAGAGCATGGGAAGCTGAACTGTACT
TTCAAATGGGATCTTGTAGAGTCGCTGCTCTACTTCCAGGTCTCTACGCG
TAGAAATCTTCTAAGGCTTCAACTGAGAAAAAAATAGTAAGAGGAAAGAA
GGAAACTCGTTAGATTTTGTGGGGGTGGTGAAGACAGAGGGTACCATTAC
AAACAGTCGATGTTGGAATTATCAAAACAAAACAATGGTTTTTATCTTTT
GGTTTGCTGCATCTTTGATGGAATAGTGTCTGAATGCTAAATATTATACA
AAACATATTCTAAGTTTCTTTTAATAATATGAACTGTACCCCCACTACAA
AAAGTATTTCCTTTACCCACTGGCCCCCACCCCTCCCTCAGGTAGGGACG
CCATTATGTACAGTTTTTGAGCCTGGGAGACAGTATGACGCAGCCTAAGG
TGCCGTGTTTTTGCCACCGTCTGTCTTCCTGAGTGCCCAACTATTTTCGC
TCCCCAGATATGTAAACATTCATTACACCTAATCAACATTTTTTCGGCCA
ACAAGGTTATGTTTCCTAATAAAATCTCCCTTCCGCCCTCTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_l10.g1 MSMg01no402_l10.g1 CHROMAT_FILE:
MSMg01no402_l10.g1 PHD_FILE: MSMg01no402_l10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:42 2005
         (305 letters)



>mm_chr8_82983074_82983778
          Length = 705

 Score =  520 bits (269), Expect = e-152
 Identities = 296/309 (95%), Gaps = 8/309 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaggcgtgtatatctgcataactaagttcgcctttggtaagatggtacttttttcttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaaggcgtgtatatctgcataactaagttcgcctttggtaagatggtacttttttcttc 260

                                                                       
Query: 61  cgtagtgctgaggaggaaactttgaactagttgctgagcctgagagagcatgggaagctg 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 tgtagtgctgaggaggaaactttgaactagttgctgagcctgagagagcatgggatgctg 320

                                                                       
Query: 121 aactgtactttcaaatgggatcttgtagagtcgctgctctacttccaggtctctacgcgt 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct: 321 aactgtactttcaaatgggatcttgtagagttgctgctctacttccaggtctctatgtgt 380

                                                                       
Query: 181 agaaatcttctaaggcttcaactgagaaaaaaatagtaagaggaaagaaggaaactcgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agaaatcttctaaggcttcaactgagaaaaaaatagtaagaggaaagaaggaaactcgtt 440

                                                                       
Query: 241 agattttg----tgggggtggtgaagacagagggtaccattacaaacagtcgatgttgga 296
           |||    |    ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aga----ggaagtgggggtggtgaagacagagggtaccattacaaacagtcgatgttgga 496

                    
Query: 297 attatcaaa 305
           |||||||||
Sbjct: 497 attatcaaa 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)