BAC Information

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BAC

Clone NameMSMg01-402O05
Chromosome8 (Build37)
Map Location 95,329,785 - 95,329,973
singlet/doubletsinglet
Overlap genenone
Upstream gene4933436C20Rik, Irx5, Irx6, LOC100041325
Downstream geneMmp2, Aytl1, Capns2, LOC100040752, Slc6a2, EG244595, LOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402O05.T7 (MSMg01no402_o05.b1)MSMg01-402O05.TJ (MSMg01no402_o05.g1)
ACCAG501929AG501930
length650854
length of high quality
(start - end)
---189 (73 - 261)
definitionCHROMAT_FILE: MSMg01no402_o05.b1 PHD_FILE: MSMg01no402_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:57 2005CHROMAT_FILE: MSMg01no402_o05.g1 PHD_FILE: MSMg01no402_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAAATTGGGCGCAAAGATCATTTTCTGACTCCGGGAATTCAGTTTTCA
CAACAAGCAAGGGAGGCCTCTAGAATGCTGTGGCTCTCCTTCTTGTCCGG
CCGGCTTCATTCCCTGAAGCACCCTGACCTGCACATTTTCAACAGATCCT
TGAGCATTTGCCGCATACCAAGCCAGACCTGCACCCGTGACACAGACGTT
TTCTCTCCTTTTTGGACTCAGCGACTCTGCTGACCTGAACCAGTACGCTT
TTTTTTTCTCCTGCCCGTAACGACCTTTCCTCCCAATTTTTGCCCCCCCT
CTCACTCAACGATCTATTATCACTTTTATTATTTGTATCTCTCTTAATGG
TATGTTTCATCTTGCTTATCCTCCCTCTTCTGTATCATTCCTCTACTTTT
CTCTAACCTCCCCTCTCACCCCGTTTTCTATTCTCCCACTCTCAATCTTT
CTCTCCTTCCCCCTTCCCCCATCCCTATCCCCCCCCCTTTCTCCTTCATC
TCTTCCCCTCCCCTCCCCGCTATTTTCTTTTTTCTCTTTTTCCCCCCTCT
TTCCTTCTATTTCTCTTATCCCCCACTCTTCCCCCCCCCTTTTTCCCTCT
TTTTTTTTTTCATTAGTTATAATCTTCTCACCCTTTCCTCTTCTTATTTT

TAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGAAAGTTTACACCTGGGATTCAATTTC
TGTTGTGCATGGATGTGTTCCCAGTGGAGACAACAGTGAGGGTGGGAGGC
AATTTGAAGCTATGCCCTCATAGTATTAAGCATCAACTGCCCCCTCAACC
AGAATAATACCTCACCCCTTTTTAGTGTGTATGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTCTCTCCTTTCTCTTCTTTTTTCCTTCTTCATACCTCCT
TTTTTTCTTTTTTTTTTCTTTTTTTTTCTTAATCTTTTACTTTTTACCTC
TCTTCCCCATCTCCTATTTATACTTGATAGTTTCCTTTCCCCTTTTTTTT
TCATTCATATTTCCTTGTTTTTTTTTCTTTTTTCCTTCTCCTTATCTTCT
CTCGTCTTACGTAATTTCCACCTTTTTTTTCCTTTCTAATATTCTTTTCT
CCTTTCTTTCGTTCCTTTTCTCCTCTTTCTCTTTTTTTTATTATCTTCCC
TTTTTTTATCCTGCATTTATCCCTCTTATCTTCCTGTCCCTCCTTCTTTT
TCCATTTACTATTTTTTTACTCCTTTTACCCCACCCCCCCTTTCTCTCAC
CCCACCTCCCTTATTCTTTATCTTTTTTCTTTTCTCCTGCATTACTTTAT
CTCTCTCTTTTATTTTTTCGCCCCTTCTTTTATTTTTACACCTTTCATTT
ATTAATTTTAATACTTCCCTAATCTTTCTACCCCCTTCCTCCTCATCTGC
CTTCCTCCTTTACTTCCTACTCCTTCCTGTCCTCTACTCATCTTTTCCCT
TTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_o05.g1 MSMg01no402_o05.g1 CHROMAT_FILE:
MSMg01no402_o05.g1 PHD_FILE: MSMg01no402_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:57 2005
         (189 letters)



>mm_chr8_95329585_95330173
          Length = 589

 Score =  366 bits (189), Expect = e-106
 Identities = 189/189 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaagtttacacctgggattcaatttctgttgtgcatggatgtgttcccagtggagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaagtttacacctgggattcaatttctgttgtgcatggatgtgttcccagtggagaca 260

                                                                       
Query: 61  acagtgagggtgggaggcaatttgaagctatgccctcatagtattaagcatcaactgccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagtgagggtgggaggcaatttgaagctatgccctcatagtattaagcatcaactgccc 320

                                                                       
Query: 121 cctcaaccagaataatacctcacccctttttagtgtgtatgtgtgtgtgtgtgtgtgtgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcaaccagaataatacctcacccctttttagtgtgtatgtgtgtgtgtgtgtgtgtgt 380

                    
Query: 181 gtgtgtgtg 189
           |||||||||
Sbjct: 381 gtgtgtgtg 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)