BAC Information

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BAC

Clone NameMSMg01-402O17
Chromosome8 (Build37)
Map Location 116,467,308 - 116,467,807
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042061, Mon1b, 4930481F22Rik, Adamts18
Downstream geneNudt7, AI427515, Clec3a, Wwox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402O17.T7 (MSMg01no402_o17.b1)MSMg01-402O17.TJ (MSMg01no402_o17.g1)
ACCAG501953AG501954
length763740
length of high quality
(start - end)
138 (134 - 271)502 (76 - 577)
definitionCHROMAT_FILE: MSMg01no402_o17.b1 PHD_FILE: MSMg01no402_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:00 2005CHROMAT_FILE: MSMg01no402_o17.g1 PHD_FILE: MSMg01no402_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTCAATTTGTGGTCGGNAAAAGAGNAAAAAGATACAAAAAAACCCG
CGGAATTCCTCATTTTCCCAACCAGTTCCAATTAGAACCTTTTCCTGTAT
AAGGGTTGCTTTGGCCATATTGTACATAGTGCGTATTCACAGCAATATAA
CATTGATTATAACACAAAGAAAACTCATACAGAGCTGGAGATGTATATGC
ATATAAACACACACACACACACTGAGAGAGGGGGGGGGAACAATTGTAAA
GGAACTTGGCATTTTCTGCAAGAGCTGGAACTCCATACATACTATAAGCC
AAAAATTCCACCTCATAACTCTTTTTATTCCAAAACAGACTATTCACCAG
AGTGTTACCTGCACTCATTCCTAGCCACAGGTTGCCTACTCTTCATCATC
AAGGTAACGGTAAGTAAATATCTATTATTATTAAATGGCATGCTTTATAC
TAATGGCAGCAAGCGAGCCACACTTCTACTATCATGCCTGGATGTTACCA
ATCTATTACCCTGAAATAGATTATCCTATACTACATCCCTCGATCTTCTT
CTAATGCTCCTGATATGAATACCCTCCCCACACCCTTATCCTGACTTCCC
TTACCCCCCCCCCCACTCACGTTCGTCTTTGCTACTTATACCCCCACTTT
TCCTCTCTCTTCACTTTATTCCCCTCCTCTATCTACATCATCCTTTTCCC
CTCTTTTTTTTTTTTGATCATTGTCTAATTCTCTTCTTTATGCTTCTCAC
CCCCCTTTTTTTA
CTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTTAAATGATCAACCATATGACC
TCGGGTGAGACATCTCCTTTCTGACCATGGACCACACGGGTGCTACACTG
GTGCACTAGGACTGGTGATCATGGCCCTGGTGGATTTGATAATGTCTCCT
AGCAACCGAAGCTTGTTTGTGGATGGGAAATAGAAAAACAAGTTGGAGGG
CTCACAAAAATATGTTCTACGAAAAACATTCCACACTGTTTTTTTGGAAA
ACAACAGACATTCACCTCTAGATATCTGATGTTTCACATCTCTTTCGAAC
ACTTATTAAAGATAAATAATGCATGCTATTCTTTTGGCTCTCTTTTTAGG
AATTAAGACTTTTATTTCCTTCAATATTGCCTGATTTTCTTACTATTTTC
TAAAGTTACATCACGTGCAACAATTTGACTTGGACTCATTTTCTGCATGT
TGGCTGTTTTGAGAACAATATATGTATATTAGAAAATGGACATTTGTTAA
AATAGGGTTTTATTTTTCTAAATAAAAGACCCCCCAACTTATATTTTGAT
TTTCCTCACATATATGTTTTTTTTAAATCCTTGTGCATCATAAAGTTTCT
CATGCTAAAGAAAAATGTGCCCATATCCCTCACCAAAGTTTGGTCATCAG
AAGTCATATTCCTTTTGGACCAATATTTCAATCCTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_o17.g1 MSMg01no402_o17.g1 CHROMAT_FILE:
MSMg01no402_o17.g1 PHD_FILE: MSMg01no402_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:00 2005
         (502 letters)



>mm_chr8_116467108_116468007
          Length = 900

 Score =  944 bits (488), Expect = 0.0
 Identities = 498/502 (99%), Gaps = 2/502 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttaaatgatcaaccatatgacctcgggtgagacatctcctttctgaccatggaccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cacttaaatgatcaaccatatgacctcgggtgagacatctcctttctgaccatggaccac 641

                                                                       
Query: 61  acgggtgctacactggtgcactaggactggtgatcatggccctggtggatttgataatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 acgggtgctacactggtgcactaggactggtgatcatggccctggtggatttgataatgt 581

                                                                       
Query: 121 ctcctagcaaccgaagcttgtttgtggatgggaaatagaaaaacaagttggagggctcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ctcctagcaaccgaagcttgtttgtggatgggaaatagaaaaacaagttggagggctcac 521

                                                                       
Query: 181 aaaaatatgttctacgaaaaacattccacactgtttttttggaaaacaacagacattcac 240
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 520 aaaaatatgttctacgaaaaacattccaca--gtttttttggaaaacaacagacattcac 463

                                                                       
Query: 241 ctctagatatctgatgtttcacatctctttcgaacacttattaaagataaataatgcatg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctcaagatatctgatgtttcacatctctttcgaacacttattaaagataaataatgcatg 403

                                                                       
Query: 301 ctattcttttggctctctttttaggaattaagacttttatttccttcaatattgcctgat 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 402 ctattcttttggctctctttttaggaattaagacttttatttccttcaatattgcctgct 343

                                                                       
Query: 361 tttcttactattttctaaagttacatcacgtgcaacaatttgacttggactcattttctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tttcttactattttctaaagttacatcacgtgcaacaatttgacttggactcattttctg 283

                                                                       
Query: 421 catgttggctgttttgagaacaatatatgtatattagaaaatggacatttgttaaaatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 catgttggctgttttgagaacaatatatgtatattagaaaatggacatttgttaaaatag 223

                                 
Query: 481 ggttttatttttctaaataaaa 502
           ||||||||||||||||||||||
Sbjct: 222 ggttttatttttctaaataaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 900
Length adjustment: 10
Effective length of query: 492
Effective length of database: 890
Effective search space:   437880
Effective search space used:   437880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)