Query= MSMg01no403_d02.b1 MSMg01no403_d02.b1 CHROMAT_FILE:
MSMg01no403_d02.b1 PHD_FILE: MSMg01no403_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:23 2005
(445 letters)
>mm_chr8_49450812_49451655
Length = 844
Score = 832 bits (430), Expect = 0.0
Identities = 439/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Plus
Query: 4 ggaattctttagtattatgatttgtcatttgtcaaaataatccctggtgtaactaataag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttagtattatgatttgtcatttgtcaaaataatccctggtgtaactaataag 263
Query: 64 ttctacgtgactaactttatgctcatcatccaccgaaaaaggtagcctcaggttcagtca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttctacgtgactaactttatgctcatcatccaccgaaaaaggtagcctcaggttcagtca 323
Query: 124 acataaacacacagatcttaattcctgtgtagtttcctgatctgtttacacatggtgcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acataaacacacagatcttaattcctgtgtagtttcctgatctgtttacacatggtgcca 383
Query: 184 atgtatcaaagtacatagcagtcgtgctaattaaagcattacattctttgaaatgtgtta 243
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 384 atgtatcaaagtacatagcagtcgtgctaattaaagaattac-ttctttgaaatgtgtta 442
Query: 244 cgtgcagttttgatgaagagatatttttctctgccatgaccccactctccagtgatgacc 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cgtgcagttttgatgaggagatatttttctctgccatgaccccactctccagtgatgacc 502
Query: 304 tgtggtgacatggcagataccagatgatagttcattgtatgaaaggttctacatggggga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tgtggtgacatggcagataccagatgatagttcattgtatgaaaggttctacatggggga 562
Query: 364 gtatttactagtattatggaaaatctaaagcctaaaatcccttcatttcattaaggtgga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtatttactagtattatggaaaatctaaagcctaaaatcccttcatttcattaaggtgga 622
Query: 424 taggctcagacagagcagtggt 445
||||||||||||||||||||||
Sbjct: 623 taggctcagacagagcagtggt 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space: 362790
Effective search space used: 362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no403_d02.g1 MSMg01no403_d02.g1 CHROMAT_FILE:
MSMg01no403_d02.g1 PHD_FILE: MSMg01no403_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:23 2005
(303 letters)
>mm_chr8_49627816_49628518
Length = 703
Score = 571 bits (295), Expect = e-167
Identities = 301/303 (99%)
Strand = Plus / Minus
Query: 1 cttctgaagactgatatcctcagagcctaggtcagtcattggcacgtgactgatgttcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 cttctgaagactgatatcctcagagcctaggtcagtcattggcacgtgactgatgttcag 520
Query: 61 tgaacatgtgttgaattggaggaaggagcagaccaagaccctagaagatggagtaagact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tgaacatgtgttgaattggaggaaggagcagaccaagaccctagaagatggagtaagact 460
Query: 121 ttagagggtgcgtgcttaccctacgacagatcgagggttgtttgtagggccgggctccta 180
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 459 ttagagggtgtgtgcttaccctacgacagatcgagggttgtttgtagggctgggctccta 400
Query: 181 cgtttaagttccattgcatgctaaactgtcagccggccgtttccattggcctgacttggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 cgtttaagttccattgcatgctaaactgtcagccggccgtttccattggcctgacttggc 340
Query: 241 ttccctcctgttccattctcgaccccaactctgtaagtccacttcttctatgaaatcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ttccctcctgttccattctcgaccccaactctgtaagtccacttcttctatgaaatcatt 280
Query: 301 gca 303
|||
Sbjct: 279 gca 277
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space: 204036
Effective search space used: 204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
