XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCTAG
GGAATTGCCGTAGGAGTGGGTGGCTAGGCAGGGAAGCACCCTCATAGAAG
CAGAAGGAGGGAGAATGGGATAGGAGGTTTGAGAAGGGGAAACTAGGAAA
GAAAATAACATTTAAAATGTAAATAAATAAAATATCCAATAAAAAAGAAT
AATAAAAATAAAACAAACTTCAATTCTATGGAACCCTGAGGTGTACATTT
GCTCCTAACATTTTTAGAAATGTAGGACTCTGTCAGGATTGCCTAATCAA
TACTGGAGAGCCACATGCACTCCAGGTAAATAATATGTGAGGACATGAAA
TAAATGTTAATTCTACTTACTGCAATGAAGTAAGGAAAATTTTTATTATT
AAAGTGTTTTGCACAAAATATGAATAGTATAGAATATTAATCACTTTATG
CCTCTGCATGTAGTCCTCTTTGTTTTAAAAGAAGGCCATTAAATTTAAAA
TACAATAGTTAGGTGACAAAATGGATTATTTTTTGCATCCTGTTGAAACT
ATTATTAGCAATAATCTTAATTATAACAGTTGACCATTAAATTAAATTTT
TAACCTCAAACTGCGTTTTTATATTTCCTGGATGAGAGGAGTACACTTTT
ATATTCTGTGAGGTAACAATCCCAGGGTTGTTTACTAAGGGGGGCCCAAA
CCAAAAAAAAAACCCTCCTCAGAAAGGGTGGCCTGACAAATAAAAAAAAA
GGGGTCTTTCTTCCTAAAAACATTTTTTTGTGGCTGCTATTTTAAAAAA

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGAACTGGTTTTGACAACATGGTCATTTTT
ACTGATTTGATTGAATCAATCCATGAGCATTGAAAGTTTTTCCATCTTCT
TATATCTTTCTCAATTTCTTCATTTCCCTAAAATCTTCCCTGAAGTAGAA
ATTTCTGGTTTCTCTAGAGACTCAGTTATGTCTTGTGATTTTTTTTTCTA
GAAAGTGTCTTCTCAGAGGATGTTTTTGCTGAAGTAGACAGATAGAAAAT
GTTTTGCTGAGGAAAGATAGAGTGTTTCTGGGAGCAGCCAGGACAAAATG
GATATACTGGAGAAAACACGTGTTGGTTGGAAAGGGTATAATTATAACCC
TACAGCCTATGAGTGATGCTGTGTGATGTTGATACTCAGTCCCATTCTTT
TCTGGTCATCATTGTACTTTGCTGACACTGGTCATCATTTGCTGTAAATT
CATATAGAGAAATGCACCAAAGAACTTCTGATGTTATTCTAGCTGATTTT
TGCAGCTTCTGATGCCCGATTGAAGAGCCTACCAGTTTATTCTGATTTAC
CCGCAATCGTTGATTCCTAAAAAGGGGTTTGCGCGGTGACCTAGCTGCCT
ACGGTCGAATCCTTTGAACTGGAATTACCCCAATCCCCCGAAATCTTTTC
CCACACACACTCTTCCCTTAATTTTTTCTAAATAAAATCACATTCTCTTT
CTTGGCCTTTAAATAACTATCTTTCTCTCTTTACACCTN

Query= MSMg01no403_d21.b1 MSMg01no403_d21.b1 CHROMAT_FILE:
MSMg01no403_d21.b1 PHD_FILE: MSMg01no403_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:27 2005
         (503 letters)



>mm_chr8_53381963_53382861
          Length = 899

 Score =  891 bits (461), Expect = 0.0
 Identities = 485/495 (97%), Gaps = 4/495 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   gaattctagggaattgccgtaggagtgggtggctaggcagggaagcaccctcatagaagc 68
           ||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaattctagggaagtgaggtaggagtgggtggctaggcagggaagcaccctcatagaagc 795

                                                                       
Query: 69  agaaggagggagaatgggataggaggtttgagaaggggaaactaggaaagaaaataacat 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 agaaggagggagaatgggataggaggtttgagaaggggaaactaggaaagaaaataacat 735

                                                                       
Query: 129 ttaaaatgtaaataaataaaatatccaataaaaaagaataataaaaataaaacaaacttc 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 734 ttaaaatgtaaataaataaaatatccaataaaaaagaataataaaaataaaacaaacctc 675

                                                                       
Query: 189 aattctatggaaccctgaggtgtacatttgctcctaacatttttagaaatgtaggactct 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aattctatggaaccctgaggtgtacatttgctcctaacatttttagaaatgtaggactct 615

                                                                       
Query: 249 gtcaggattgcctaatcaatactggagagccacatgcactccaggtaaataatatgtgag 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtcaggattgcctaatcaatactggagagccacatgcactccaggtaaataatatgtgag 555

                                                                       
Query: 309 gacatgaaataaatgttaattctacttactgcaatgaagtaaggaaaatttttattatta 368
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gacatgaaataaattttaattctacttactgcaatgaagtaaggaaaatttttattatta 495

                                                                       
Query: 369 aagtgttttgcacaaaatatgaatagtatagaatattaatcactttatgcctctgcatgt 428
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 494 aagtgttttgcacaaaatataaatagtatagaatattaatcactttatgcctctgcatgt 435

                                                                       
Query: 429 agtcctctttgttttaaaagaaggccattaaatttaaaatacaatagttaggtgacaaaa 488
           ||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||
Sbjct: 434 agtcctctttgttttaaaagaaggccattaaatttaaaatacaa----taggtgacaaaa 379

                          
Query: 489 tggattattttttgc 503
           |||||||||||||||
Sbjct: 378 tggattattttttgc 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 899
Length adjustment: 10
Effective length of query: 493
Effective length of database: 889
Effective search space:   438277
Effective search space used:   438277
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)