BAC Information

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BAC

Clone NameMSMg01-403I09
Chromosome8 (Build37)
Map Location 52,849,550 - 52,849,740
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667517
Downstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik, LOC676688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403I09.T7 (MSMg01no403_i09.b1)MSMg01-403I09.TJ (MSMg01no403_i09.g1)
ACCAG502414AG502415
length767758
length of high quality
(start - end)
194 (118 - 311)94 (205 - 298)
definitionCHROMAT_FILE: MSMg01no403_i09.b1 PHD_FILE: MSMg01no403_i09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:50 2005CHROMAT_FILE: MSMg01no403_i09.g1 PHD_FILE: MSMg01no403_i09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGTGGTCGCTAAACGAATCACTATTTCAAACACTATCCGCGGAAATCA
CTGTATACCTAAAAATCACTCATTGCATCCAGNGATGCATGAGAACATGA
GACTGGAATCTCACCTATAGGACTGTTCTGTGAATGAACAATTCACACAT
AATTTGATCGCTGGAATTAATCTCTTATTAATTGTATTTGATTACAATGA
AAAACTGCTTAAATGTTAAATTCTCATACTGGTCAGCTCAATATTATTCA
ATCATTTCTCTATTCATCCTAATCTATGTATTTTTAAATTAAGTACTAAA
TTTCATATTTAAGTTAATGCAACCCTTACAAAAGAAATAAGGAAGAGATT
GGGTTAGGAGGCTTTTCATATAAGGGCTACGTTTTCTTTTGCGTGTAATT
CAACCAATTTCTTCTTTTGCTAAAATATTTATAGTAAAACTGTCTGACTT
ATTTTTAATAGTTACACCTGTATCATTTTTCTCCTGAATTAGTATAATTC
TATATATCCAAATCACAAATTTTATTTTATAAATTAATAATTTAACCAGA
TTGCCTTTCCAATACCCAATAATAAAGTATGCATCGTAACAATGTATAGC
TGACATTTTCTTACTGACGCCCTACGCAAATCGATTGAATTTCTTCTTTT
TTATTAATAACTCTCAATATCCTTTCAACAACCTATCATACAAACCGACA
ATTACATCACCTTCCTCTATCACCCGTAACACCTACTTTTTCTCAAACCT
ATTTGAATTCCTTTTGT
TGATCTGCGAAGGCNAGGGGGNCGCTATACCGACCCCTTTAGGNGACCNA
TAGTTGGCTACACACAATTCAGNGNNNGATTAACATTGCCTCCCTCCACT
GACACACTTTTTTTCCTTCACTGAGTCTACTAGTGTTACTTTCTACAGTG
ATTTTTTTATTATTTAATTTATTAATAGCCTAATGTGAGGAGTGTTTTTG
TGTGTTGAAATCTCAATTACTTGGCTCCATTATTCTCCTGTGTTGTTGAC
CCCTGAACATTGCCCGTTTTTCTATCCATTTTGCATTGATTCTGCTCCAG
ACCTTTTTTTTATGTTCCGGCNCGCATTCCCATGGGAANNTGCCATCTCT
TCTGGACCCCCGATTATTCCTTATTACCGAATTGTAGTCCCCCATCACCC
CGCTTTCCGCCTCTAGCCGACCCCACCCCTTCCCCAATTACCATACTGCC
CTTTCCCCCCCCTTTTCCTTCCTCCCTTTTCCCCCTCCCCCCCTTTCCCT
CCCCCCCTCTTTTTCCCTCTCTCTCCCCTCTTCTCTTCCCCCTCCCTCCT
CTCCCCTCCTCCTCCTTCCTCCCCTCTCCTTTCCCTTCTCCTATTCTCCC
CCCCCCTTCCCTTTTTCCCTCCCTTCCTCCTCCCCCCCTTACTTCTTTTT
TTTTTTCCTTTTTCCCCCTTCCCTTTTCTATTCACTTCCCCCCTTCCCCC
TCCACCTCCCTCTTTTCCCCTCTTTTCCCCCCCTTTCCCTTCCATTCCCT
CACTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_i09.b1 MSMg01no403_i09.b1 CHROMAT_FILE:
MSMg01no403_i09.b1 PHD_FILE: MSMg01no403_i09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:50 2005
         (194 letters)



>mm_chr8_52849350_52849943
          Length = 594

 Score =  339 bits (175), Expect = 9e-98
 Identities = 187/191 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggactgttctgtgaatgaacaattcacacataatttgatcgctggaattaatctctta 60
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 391 taggactgttctgtgaatgaacaattcacacataatttgatcgccggaattaatctccta 332

                                                                       
Query: 61  ttaattgtatttgattacaatgaaaaactgcttaaatgttaaattctcatactggtcagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ttaattgtatttgattacaatgaaaaactgcttaaatgttaaattctcatactggtcagc 272

                                                                       
Query: 121 tcaatattattcaatcatttctctattcatcctaatctatgtatttttaaattaagtact 180
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tcaatagcattcaatcatttctctattcatcctaatctatgtatttttaaattaagtact 212

                      
Query: 181 aaatttcatat 191
           |||||||||||
Sbjct: 211 aaatttcatat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)