BAC Information

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BAC

Clone NameMSMg01-403K22
Chromosome8 (Build37)
Map Location 53,913,100 - 53,913,511
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC623872, LOC100040220, LOC623935, 1190028D05Rik, LOC676688
Downstream geneAga, Neil3, LOC100040107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403K22.T7 (MSMg01no403_k22.b1)MSMg01-403K22.TJ (MSMg01no403_k22.g1)
ACCAG502535AG502536
length809794
length of high quality
(start - end)		447 (40 - 486)411 (69 - 479)
definitionCHROMAT_FILE: MSMg01no403_k22.b1 PHD_FILE: MSMg01no403_k22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:03 2005CHROMAT_FILE: MSMg01no403_k22.g1 PHD_FILE: MSMg01no403_k22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
TTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTC
TTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTC
CCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCA
GGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCC
TCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTT
AGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTC
TACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGNAAATGCTGTCT
TTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATA
AGTGTGTGGGTTCATTTCTGGATCTTCAATTCTATTCCATTGGGCCAATT
GTCCGGCTCCATAACCAGACCATGCGGGTTTTATCCAATTGTTCTGTTCT
AAAGTTTTTTTTTGGTGTTGGGGGTTTCCCCCCAAAATCCTTTTTCCTTT
TAAAAACCTTTTTGTTTTCCCAGCCTTTTTTGTTTTTCTCTACAAAACCG
GAAATTTGTTCCTCCTCCCTCCTCTCAATAATATGTTTGGCCATTTTTTC
GCGTTTCGA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTGATCAAAATTTTTGTATTATAGATATTAAT
GGTATTGAATCTCTCCATAAGTGTTACCAATAACCTTGCAGAAAACTGTA
CTGAGGCACACATTTGCATTAGAAAATAATAGGAAGTATTTTATATGGTG
TATCTCTGTTCTTAACTAGTATTATGTATATGTCTTGTGCTAGAAATCTA
AGTACTTGTTTAAATTGAGGAAAGAAGATATTAATTCTAGGACAGCCTGG
GTTTCAATCCTATATTCTATTTCAATTCAAAATAACATAAAGCCGGGCGG
TGGTGGTGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGA
TTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGAACAGCC
AGGGCTATACAGAGAAACCCTGTCTCGAANAGTTAAAAAAAAACAAAAAC
TAAAACCAAATACAAAAAAGTGACCAAATGATATAAAACACACCTATAAC
TAATATACAACAAACCCAATAATATTATCCACCCCAAGATAAGCTCAAAG
TTTTTCCTAATTTATATATAAAATCCTGACTGAAGAACCGGGGATTTATA
CAACAAATTCCTGAAACAAGGGGGAACTGCTTATTAAAACCCTATAATCC
CACAACGGAAACCTCCTTATCCTGCCCTGATCAAATGTTTTTCCACATAC
CTTAAATATAACCTCCCTACAAGGGCCGATCTCCAAATTTGTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_k22.g1 MSMg01no403_k22.g1 CHROMAT_FILE:
MSMg01no403_k22.g1 PHD_FILE: MSMg01no403_k22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:03 2005
         (411 letters)



>mm_chr8_53913040_53913850
          Length = 811

 Score =  766 bits (396), Expect = 0.0
 Identities = 408/412 (99%), Gaps = 1/412 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatcaaaatttttgtattatagatattaatggtattgaatctctccataagtgttacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttgatcaaaatttttgtattatagatattaatggtattgaatctctccataagtgttacc 413

                                                                       
Query: 61  aataaccttgcagaaaactgtactgaggcacacatttgcattagaaaataataggaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aataaccttgcagaaaactgtactgaggcacacatttgcattagaaaataataggaagta 353

                                                                       
Query: 121 ttttatatggtgtatctctgttcttaactagtattatgtatatgtcttgtgctagaaatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 ttttatatggtgtatctctgttcttaactagtattatgtatatgtcttgtgctagaaatc 293

                                                                       
Query: 181 taagtacttgtttaaattgaggaaagaagatattaattctaggacagcctgggtttcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 taagtacttgtttaaattgaggaaagaagatattaattctaggacagcctgggtttcaat 233

                                                                       
Query: 241 cctatattctatttcaattcaaaataacataaagccgggcggtggtggtgcacgccttta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 cctatattctatttcaattcaaaataacataaagccgggcggtggtggtgcacgccttta 173

                                                                       
Query: 301 atcccagcacttgggaggcagaggcaggcggattt-ctgagttcgaggccagcctggtct 359
           ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct: 172 atcccagcacttgggaggcagaggcaggcggtttttctgagttcaaggccagcctggtct 113

                                                               
Query: 360 acagagtgagttccagaacagccagggctatacagagaaaccctgtctcgaa 411
           |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 112 acagagtgagttccagaacagccagggctatacagaaaaaccctgtctcgaa 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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