BAC Information

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BAC

Clone NameMSMg01-403M02
Chromosome8 (Build37)
Map Location 96,579,581 - 96,580,142
singlet/doubletsinglet
Overlap geneOgfod1
Upstream geneLOC382044, Es1, LOC676523, Ces3, Es22, AU018778, Ces1, 2310039D24Rik, Ces7, Gnao1, Amfr, Nudt21
Downstream geneBbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403M02.T7 (MSMg01no403_m02.b1)MSMg01-403M02.TJ (MSMg01no403_m02.g1)
ACCAG502591AG502592
length749567
length of high quality
(start - end)
565 (44 - 608)173 (57 - 229)
definitionCHROMAT_FILE: MSMg01no403_m02.b1 PHD_FILE: MSMg01no403_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:09 2005CHROMAT_FILE: MSMg01no403_m02.g1 PHD_FILE: MSMg01no403_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTACCTTGTCCACATACTGTAGCATATCAGTTGTTTTTCTGTCTTTA
CTTGGGAGGACCATGAGAGCTGACATGTATTTTGCAGCATTAGACATCAA
ACCAGGGGCCTTACATATGTTAACCAAGAACTCTTCCAATGAACTATGTA
CCCAGCATGTTTTTCTGATCTTAAAATTGGGTTTTGCCAGTGCTGGAACT
CGACTTGGAACATCCACTTTTCGTACATAGATTTTGACAATGTTTTCCAG
TACTCTTTGTTTGATAGGAGAAACATGAAAAGTGAGAGCTGTGGACTGGT
GTAAGGACAGAAGCTGTAGAGACTAACGCATCTCCTCTATCTGCTGCTTC
TCTTGTAAGCATGAAATTTTATATGAGTGGATCAACCCTGCTTACCTGGA
AATGGATTATCAAATGCAAATTCAAGAAGAATTTGAAGAAAGGTCTGAAA
TTCTCCTGAAGGAGTTTCTTAAGGTAGGCCACCATACCCTGGTTTCTATG
TGTTGTCTGACATTTCATCTTGGGAAAATTGACTGCATCAAGATTTATTT
TCCTTCTTAGTTCACATGTTTATGTATTCTCTTCAAATGAAATACACCAA
TCATGATAGCAAGCATTGCTGTCAGGCGGATGCACGACATCCCCAGAACT
CTATGAATTCTTTTCCTTTACGGTTTGGTTTTTGGTTTTTACACAAAAA
ATGTAGGGAGGCTGGGGCGCTGGTCCGAATTTAGGAACTATAGAAGTTCC
GGGAATCCTGGCTTCCTGCTGCTACATCTCAATATCTTGATTACGGAGGA
CCCACGCTCTTTATCACTTTTTTTTCCATCTTTTTTTTTTATTGGATATT
TTCTTCGTTTATATTTCAAATGCTATCCCAAAAGTCCCCTATACCCCACC
CCTACCCCCACCCCGCTCCCCTACCCACTCACTCCACTTTCTGGGCCGGG
GGCTTTCCCGGAAGGGGGAAAATTTGGGAAAAAGGGGGCTTTTTTTTTGG
GGGGGGCCNNNAGAGAGGTTTTTTTTGGGGGAAAAGTAAAGAACGTACCC
CCTTTTCTTCCGTGGTGGCCGTCGTCAGTGTGCCCATAAAATAAGGGTTC
GCTTTCCCCCCTCCCCNNCNNGGGGATGGCNNNNNCGNNNNNNNANNNNN
NNCCTCGGGGCGNTNNTCTNTTNNNNNCCNTCTTCCTTCCCTCCTTCNNN
CNNNNTNCCNTNNNNNNNCCAGGGGANNNTTGTTACGGGGCTTNNNACCT
CCATATTTGAGAANATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_m02.b1 MSMg01no403_m02.b1 CHROMAT_FILE:
MSMg01no403_m02.b1 PHD_FILE: MSMg01no403_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:09 2005
         (565 letters)



>mm_chr8_96579378_96580342
          Length = 965

 Score = 1060 bits (548), Expect = 0.0
 Identities = 559/564 (99%), Gaps = 4/564 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttaccttgtcc--acatactgtagcatatcagttgtttttctgtctttacttg 61
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcttaccttg--cgtacatactgtagcatatcagttgtttttctgtctttacttg 261

                                                                       
Query: 62  ggaggaccatgagagctgacatgtattttgcagcattagacatcaaaccaggggccttac 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggaggaccatgagagctgacatgtattttgcagcattagacatcaaaccaggggccttac 321

                                                                       
Query: 122 atatgttaaccaagaactcttccaatgaactatgtacccagcatgtttttctgatcttaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 atatgttaaccaagaactcttccaatgaactatgtacccagcatgtttttctgatcttaa 381

                                                                       
Query: 182 aattgggttttgccagtgctggaactcgacttggaacatccacttttcgtacatagattt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aattgggttttgccagtgctggaactcgacttggaacatccacttttcgtacatagattt 441

                                                                       
Query: 242 tgacaatgttttccagtactctttgtttgataggagaaacatgaaaagtgagagctgtgg 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tgacaatgttttccagtactctttgtttgataggagaaacatgaaaagtgagagctgtgg 501

                                                                       
Query: 302 actggtgtaaggacagaagctgtagagactaacgcatctcctctatctgctgcttctctt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 actggtgtaaggacagaagctgtagagactaacgcatctcctctatctgctgcttctctt 561

                                                                       
Query: 362 gtaagcatgaaattttatatgagtggatcaaccctgcttacctggaaatggattatcaaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gtaagcatgaaattttatatgagtggatcaaccctgcttacctggaaatggattatcaaa 621

                                                                       
Query: 422 tgcaaattcaagaagaatttgaagaaaggtctgaaattctcctgaaggagtttcttaagg 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tgcaaattcaagaagaatttgaagaaaggtctgaaattctcctgaaggagtttcttaagg 681

                                                                       
Query: 482 taggccaccataccctggtttctatgtgttgtctgacatttcatcttgggaaaattgact 541
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 682 taggccaccataccctggtttctatgtgttgtctgacatttcatcttggtaaaattgact 741

                                   
Query: 542 gcatcaagatttattttccttctt 565
           ||||||||||||||||||||||||
Sbjct: 742 gcatcaagatttattttccttctt 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)