BAC Information

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BAC

Clone NameMSMg01-403P11
Chromosome8 (Build37)
Map Location 67,553,901 - 67,554,321
singlet/doubletsinglet
Overlap genenone
Upstream geneTll1, LOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60
Downstream geneLOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967, March1, LOC100040986
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403P11.T7 (MSMg01no403_p11.b1)MSMg01-403P11.TJ (MSMg01no403_p11.g1)
ACCAG502751AG502752
length781741
length of high quality
(start - end)
415 (67 - 481)244 (73 - 316)
definitionCHROMAT_FILE: MSMg01no403_p11.b1 PHD_FILE: MSMg01no403_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:27 2005CHROMAT_FILE: MSMg01no403_p11.g1 PHD_FILE: MSMg01no403_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCTGATCGCAGTAACATTCCACACATTTGCGTCCAGTTCTAACCCAGTT
CGCCTGGTTTTAATAGTTGACTAATTAAAAAAGTAACTAAGACCATAGGA
GCTGGACACAAGGCTATATACCCATGGTTCTGGCAGCAGCATGAACCCAC
AACCCGAAGCTGAGGCAGGAGTGCCACTCACACCAGGAATTCAAGGTCAG
CTGGGCAACAGAGAAAAAAGGTATAGAGAAAGGTGCAGCGGTGCCTGCTG
TAAACCCTGGCACTTTAAGACAGAAGCACCTGAAAGATAGAGACCAGAGA
GTCAGAAGTTCAAGGCTATACAGTGAATATGTGTCCTGTGAGTCTGAGAC
CAGCTGGAAGATATAGCAATACCCTCTGCCTCCCCACACACAGGCACGCA
CGTGTATGCACACACACACTCACACATACACACTCACTCACATACATACT
CACTCAGGCATACTTACACTCATACACTCACTCCCATACACTGACTCCTA
TTCTGATCACACACATTCTACTTACACATACATATCACACCTACCTATTT
ATATACTATACATCATCTTTATACTCCATACTATACCCCTTTTGAACCCT
CATTGTTTACTTCCTACTCCCCTCATCCTAGTGTACTCCCTTTTACTTCC
CTTTCTCCCCCCCCGACTATTTTTTACCACCTCTGTTTTTCTCCGCTTAT
CCCATCACAACTCCACTTTTTCTTTCCCTTA
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTGACAAAAAGGAAGGCTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAATTTTGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCTTCTTTTTTACTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAATAA
GGACACATGCTCCACTATGCTCATAGTAGCCTTATTTATAATAGCCAGAA
GCTGGAAAGAACCTAGATGTCCCTCAATAGAGGAATGGATACAGAAAATG
TGGCACATCTACACAATGGAGCACTACTCAGTTATTAAAAAGAATGAATT
TATGAAATTCCTAGCCTAATGGATGGACCTGGATGGTTTTATCCTGAGTG
AGGTAATCCCTTCACTAAGAAACTTCCTACCTATGTACTCACTGTTTTTT
CGATACTAACCCCAAACCCACCATACCTTAGATATTACATATCCTTTTGT
CAAACCCTTGACACCCTTTAAAAATGAATACCGTTCCGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_p11.b1 MSMg01no403_p11.b1 CHROMAT_FILE:
MSMg01no403_p11.b1 PHD_FILE: MSMg01no403_p11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:27 2005
         (415 letters)



>mm_chr8_67553701_67554515
          Length = 815

 Score =  717 bits (371), Expect = 0.0
 Identities = 406/421 (96%), Gaps = 6/421 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccacacatttgcgtccagttctaacccagttcgcctggttttaatagttgactaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attccacacatttgcgtccagttctaacccagttcgcctggttttaatagttgactaatt 260

                                                                       
Query: 61  aaaaaagtaactaagaccataggagctggacacaaggctatatacccatggttctggcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaagtaactaagaccataggagctggacacaaggctatatacccatggttctggcag 320

                                                                       
Query: 121 cagcatgaacccacaacccgaagctgaggcaggagtgccactcacaccaggaattcaagg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cagcatgaacccacaacccgaagctgaggcaggagtgccgctcacaccaggaattcaagg 380

                                                                       
Query: 181 tcagctgggcaacagagaaaaaaggtatagagaaaggtgcagcggtgcctgctgtaaacc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 tcagctgggcaacagagaaaaaaggtatagagaaaggtgcagcggtgcctactgtaaacc 440

                                                                       
Query: 241 ctggcactttaagacagaagcacctgaaagatagagaccagagagtcagaagttcaaggc 300
           |||| |||  ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtactcgaagactgaagcacccgaaagatagagaccagagagtcagaagttcaaggc 500

                                                                       
Query: 301 tatacagtgaatatgtgtcctgtgagtctgagaccagctggaagatatagcaataccctc 360
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 501 tatacagtgaatatgtgtcctgtgagtctgagaccagctggtagatatagcaataccctc 560

                                                                       
Query: 361 tgcctccccacacacaggcacgcacgtgtatgcacacaca------cactcacacataca 414
           ||||||||||||||||||||||||||||||| ||||||||      ||||||||||||||
Sbjct: 561 tgcctccccacacacaggcacgcacgtgtatacacacacagacacacactcacacataca 620

            
Query: 415 c 415
           |
Sbjct: 621 c 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)