BAC Information

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BAC

Clone NameMSMg01-404B08
Chromosome8 (Build37)
Map Location 78,471,676 - 78,471,924
singlet/doubletsinglet
Overlap gene1700007B14Rik
Upstream geneHmgb2l1, Tom1, LOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404B08.T7 (MSMg01no404_b08.b1)MSMg01-404B08.TJ (MSMg01no404_b08.g1)
ACCAG502840AG502841
length757772
length of high quality
(start - end)
249 (66 - 314)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no404_b08.b1 PHD_FILE: MSMg01no404_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:37 2005CHROMAT_FILE: MSMg01no404_b08.g1 PHD_FILE: MSMg01no404_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCCT
AGGCTTCCCTAGACTCTCAACTCTCAAACACAAGAAGGAAGATTGAAAGT
GTTTACCTCTCTCCAGGTCATGTTCCATTTTCAGTTGGGTCAAGAACAAG
CATTACAGACTTCCTGAGAGTCAGGAATGTATGTAGTGTTTCTGAAGCTC
TTGTTTTTATAATCTTACTTAAATAAACTGCATATGTATTCTTTAGATTT
TCCCAATATCGACTTGAAGTTTAACTCCTCTGCTTAAAGGATAAGACAAA
GGAGGGAAAAGTGAATTTCTCAATCTGCTACTGCTTTTCCTCAAACAGAA
GTTTGGAGAGAACATGAGGAGAGCCCAGGACTTGTGACAATAGCTATATT
TCTGGACTTAGGTCCTAACATGGTCTTAATCTGACTCTCAAACCATCCAT
TTAAGCATATCTACTACTAAAGGCCTACCAAGTGTTAGAATGTGACTATC
TAGAATAAGTTAGCATGATAGTCCTTAAAGGTCTCGTGAGATAACAGAGA
GCTGAATACTGTTTAAGCATACCGTAAGAGGTGACTGTCACCATTCCCTT
GTGGAATAATGACCCGTAGGTAATAATAAACTTTTGTGTTCGGCTATTTT
TTTTTATAATCTTCTATTATTTTCTGTTTTCTTCCCGCTTTCTGGATTTC
TTTATAATCTCTCATTTTTTCCTTTTCTTCTTCTCCTATCCTATTGGTTT
CTTTTTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGCAGTTGAATCCTTCTCAACAGTCTGTTT
TACGGGAACCTTTATTACTGTGACCCGCAGTTCTGTTTCTGGAATGAGGG
ATCTTCCTTGCGCCGGTCCCGAGTTTTCTTGTATTTTTTCGTCCCGGATT
TTTTCTCGTCCCGGATTTCAGCACCAACTCTTATACGTGTTCTCACGACC
GGCCAGGAAAGAACACAACAAACCAGAATCTTCTGCGGCAAAACTTTATT
GCTTACATCTTCAGGAGTTTTTAGCGCAAAACCCCAAGCCCCAAAAACGA
AAGCCCCCTTCTTACATCTTTAGGAGCCAGAGCACCAGAGCGCGCCAGAG
CGCGCCAGAGCGCAGAGCAAGAGCTCTATTGTTTACATCTTTAGGAGCCA
GAAGCCAGAGCGCGTCTGAGCGCCCGAGAGCATAGTACGAGCTCTATTGT
TTACATCCTTATGAGCAGGATCGCACTTTTCCATGCCCTTATAACGAAAG
CCCCCTTCTTACCTCCTTTTATAGTCTCAGTGTCATAGTCGCGCCCTAAT
TTTTCCTTATTTTTTTAGCGCCCTTCCCTGCATCTTTATTGTTTGTTTTC
CCCCGCCCCCCTTTCTATGATGGTGTTATATCTTCTTTTCAAGTACCGCT
CTCCCTCCCTTGTATATTGTTTATACTCCTTTGTCTAAATTTTATCTTTT
CTTTCCCATCCGTTTTCTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_b08.b1 MSMg01no404_b08.b1 CHROMAT_FILE:
MSMg01no404_b08.b1 PHD_FILE: MSMg01no404_b08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:37 2005
         (249 letters)



>mm_chr8_78471476_78472124
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaactctcaaacacaagaaggaagattgaaagtgtttacctctctccaggtcatgttc 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ctcaactttcaaacacaagaaggaagattgaaagtgtttacctctctccaggtcatgttc 390

                                                                       
Query: 61  cattttcagttgggtcaagaacaagcattacagacttcctgagagtcaggaatgtatgta 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 389 cattttcagttgggtcaagaacaagcattacagagttcctgagagtcaggaatgtatgta 330

                                                                       
Query: 121 gtgtttctgaagctcttgtttttataatcttacttaaataaactgcatatgtattcttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 gtgtttctgaagctcttgtttttataatcttacttaaataaactgcatatgtattcttta 270

                                                                       
Query: 181 gattttcccaatatcgacttgaagtttaactcctctgcttaaaggataagacaaaggagg 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 269 gattttcccaatatcgacttgaagtttagctcctctgcttaaaggataagacaaaggagg 210

                    
Query: 241 gaaaagtga 249
           |||||||||
Sbjct: 209 gaaaagtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)