Query= MSMg01no404_k01.b1 MSMg01no404_k01.b1 CHROMAT_FILE:
MSMg01no404_k01.b1 PHD_FILE: MSMg01no404_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:22 2005
(254 letters)
>mm_chr8_45440386_45441039
Length = 654
Score = 453 bits (234), Expect = e-132
Identities = 246/250 (98%)
Strand = Plus / Plus
Query: 1 tcatcctgaaacagataaaataagacaaatataatttaagcatgaagttaattttgttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatcctgaaacagataaaataagacaaatataatttaagcatgaagttaattttgttca 260
Query: 61 gcagagtagaaattgtaaatatagtaatgaccatggggaattttgggagactgacataat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcagagtagaaattgtaaatatagtaatgaccatggggaattttgggagactgacataat 320
Query: 121 ctgagaagtcgattaggcatttcaaacaaaataaatatttcatatcttaagagaacatga 180
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaagaagtctattaggcatttcaaacaaaataaatatttcatatcttaagagaacatga 380
Query: 181 gataaaggctgtggtgaagagcatcaagaagtatactaaatactgtgcatgattacctct 240
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataaaggctgtggtgaagaacgtcaagaagtatactaaatactgtgcatgattacctct 440
Query: 241 tgggagcaca 250
||||||||||
Sbjct: 441 tgggagcaca 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_k01.g1 MSMg01no404_k01.g1 CHROMAT_FILE:
MSMg01no404_k01.g1 PHD_FILE: MSMg01no404_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:22 2005
(404 letters)
>mm_chr8_45572590_45573393
Length = 804
Score = 607 bits (314), Expect = e-178
Identities = 375/410 (91%), Gaps = 25/410 (6%)
Strand = Plus / Minus
Query: 1 agaaaatcactaagtttaggagctaaagaataggtagccagaagaggatgcgtagccaca 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 477 agaaaatcactaagtttaggagctaaagaataggtagccagtagaggatgcgtagccaca 418
Query: 61 gctccgaggcagaaattcacctttcccaagacacctctcagactccccaccatcacagca 120
||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct: 417 gctcccaggcagaaattcacctttgcttagacacctctcagactccccaccatcacagga 358
Query: 121 tccaaagtgatttcataatttacctgctctggaaattgtacaaatgcctaccttggagtt 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 357 tccaaagtgatttcataatttatctgctctggaaattgtacaaatgcctaccttggagtt 298
Query: 181 agtccaggaaattctgcttttaggctccagttgcatataaattatcaggagtgttgctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 agtccaggaaattctgcttttaggctccagttgcatataaattatcaggagtgttgctgg 238
Query: 241 gatgttcttttttt------atgctgagtaaccacaatttgaagtctaagggcaggctct 294
||||||| | ||||||||||||||||||||||| ||||
Sbjct: 237 gatgttc------tacacagatgctgagtaaccacaatttgaa-------------ctct 197
Query: 295 ttgctggatagattcacatacagctgtaaactaccatgggtgggtatgttaagggcagtg 354
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct: 196 ttgctggatagattcacatacagctgtaaacgaccatgggtgggtatgttaagggcagag 137
Query: 355 gtggtcagcattggtcagactattccctttccggcgagtagacagaggag 404
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 136 gtggtcagcattggtcagactattccctttccggtgagtagacagaggag 87
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
