BAC Information

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BAC

Clone NameMSMg01-405D23
Chromosome8 (Build37)
Map Location 120,347,149 - 120,347,538
singlet/doubletsinglet
Overlap genenone
Upstream gene2310061C15Rik, 2610510J17Rik, BC060631, 1700030J22Rik, Gcsh, Pkd1l2, Bcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405D23.T7 (MSMg01no405_d23.b1)MSMg01-405D23.TJ (MSMg01no405_d23.g1)
ACCAG503724AG503725
length765790
length of high quality
(start - end)
147 (49 - 195)390 (78 - 467)
definitionCHROMAT_FILE: MSMg01no405_d23.b1 PHD_FILE: MSMg01no405_d23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:10 2005CHROMAT_FILE: MSMg01no405_d23.g1 PHD_FILE: MSMg01no405_d23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGGCACCGC
GGAATTCCCTAAAACTCCGAACTGGAAGATATCTATCTATCTATGCATAT
ATACATATATGTGTGTGTGTATATATATATATATATATATATATATATAT
ATATATGTATGCACACACACATATACATATACACACACATATTATATATA
TGCAAAGGATCCACGGAAGGTTAAAAAATTTTCCCTGTCCAAAGCGTATG
AGACGAAGGACCTTCGAGGATGTCACTGATTTCTTCTGTGTTGGCTACAC
TACTGCTGGACCTGGGGCTAACCCTTATTTTTGGTTTGTATCCTCAGCGA
GACAACTGGAGATAGCTGCTGGGCCCACTTCTATCTGAGCTGGGACTTGA
TCTGGTGCAGACCCGTGCGGGCCCTGTGCACACTGCCATGGTCTCCATGA
GTTCATATGTGGCCCTGCTGTGTTTAGAAGGCCTTGTTCCCTCCCAGCCC
CCCATCCTACCCGGGTCTTACCAACTTTTCCCCTTCCCCTCCCACCCGCC
CTCCCCGAACCCCACACGTAAGTACCGGTCTTACCCCCCGCCTTCTCCCT
CCCCGTCCTTCGCTCCTCCCCCCCCCACATTTGCCCTATCTCCCTCCTTC
TCTTCTCTGCCCCCTTTCTTTTCTTCATTCGCACTCCCACTCTCCTCGTT
TTCCTCCCTCACCGCCCCTCCCCCTCCTTCTCGTCCCCTCTCACCCCCTG
CCTGCTCCCCTCCCC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGCTTATCCCCCATTGAATG
TAATGCCAAACACCATCTCAACATTGCATTCTCTCTAGTGCCTTGCCTGG
GGTGGGGTTTTTAATGATTCAAGGCTGGAATTGTTCATGAGGGAGTGAAG
CGGAGTCTACCTCCAGGTAGATTCCTATGGCGACTGAGCTGGGGAAGGGC
TTCCCAGTAAGCAGACGAAAAGGTCCTGAGGAAGGTTTTGCTTTTCTGTA
GGCAGAAGGAAAACACCCATGATGTCATGCAGTCACGCCCACCCCTTCCC
CACCTTGGTCTTATAAAGGATGAGGAGGAATGTGCTTCCCCACGGCCCTT
CCTCAGAGACATACCATAGAGAAGGGCCAGCAGGCAGGAGGCACTCAGAA
CGAACGGGCGTCATAAAGGTCTAGCTTAAGTTTTATGTAAGTCATTTCCC
GTTATCTTCCTCAAGACTGGCATACTAGTGTGTCCACCAGGGGAACATGG
GCACTCTGCTCTTACGCTATAATCCTTGATCCCTGTCTAAACTCATCATT
TGTTACTTGGTAAGAAAAAAACTCCTGTACGTCTATGCCTGACTTGAATT
CCTCTTGAAGCCATGTTTCTTAAGGCCTTACCGCCCTCTGGAATAATATC
TCCTATTGGGTTCTTTTAGCTCCTTCTCTTCCCTGTCTTCCTTTTTTTGC
CGCTGTCATTATTATTCTTTTTCTCTTCTTCCTCTCCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_d23.g1 MSMg01no405_d23.g1 CHROMAT_FILE:
MSMg01no405_d23.g1 PHD_FILE: MSMg01no405_d23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:10 2005
         (390 letters)



>mm_chr8_120346949_120347738
          Length = 790

 Score =  754 bits (390), Expect = 0.0
 Identities = 390/390 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgcttatcccccattgaatgtaatgccaaacaccatctcaacattgcattctctcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 ctatgcttatcccccattgaatgtaatgccaaacaccatctcaacattgcattctctcta 531

                                                                       
Query: 61  gtgccttgcctggggtggggtttttaatgattcaaggctggaattgttcatgagggagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gtgccttgcctggggtggggtttttaatgattcaaggctggaattgttcatgagggagtg 471

                                                                       
Query: 121 aagcggagtctacctccaggtagattcctatggcgactgagctggggaagggcttcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 aagcggagtctacctccaggtagattcctatggcgactgagctggggaagggcttcccag 411

                                                                       
Query: 181 taagcagacgaaaaggtcctgaggaaggttttgcttttctgtaggcagaaggaaaacacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taagcagacgaaaaggtcctgaggaaggttttgcttttctgtaggcagaaggaaaacacc 351

                                                                       
Query: 241 catgatgtcatgcagtcacgcccaccccttccccaccttggtcttataaaggatgaggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 catgatgtcatgcagtcacgcccaccccttccccaccttggtcttataaaggatgaggag 291

                                                                       
Query: 301 gaatgtgcttccccacggcccttcctcagagacataccatagagaagggccagcaggcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaatgtgcttccccacggcccttcctcagagacataccatagagaagggccagcaggcag 231

                                         
Query: 361 gaggcactcagaacgaacgggcgtcataaa 390
           ||||||||||||||||||||||||||||||
Sbjct: 230 gaggcactcagaacgaacgggcgtcataaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 390
Length of database: 790
Length adjustment: 9
Effective length of query: 381
Effective length of database: 781
Effective search space:   297561
Effective search space used:   297561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)