TAAATTTGCGGCGCTAAACGACTCCTANATGCCGAGGTCCGCGGAATCCT
AGTNGTGCCACATACATATACTCATGATTATATGTTTAACTTCCTTCTTC
AAGTGGGGAGACAGTTTGTGATCTCATGTTTTCTTCAGGGATAACAGAGG
AAACATAAACTTAACTCTCCAAACCAGGAGACTTTTAAGATATAACAAAA
GAAATAAGGATAGAGGATGTCAAAACAAAGTGTTCCAGGATTGGTCTGTT
TGAGAGTACCGGTGCATTTTCTTAACTACCGGATGGAGATAACTTATAAT
TTACATTTTTTTTTTAAATGCATTTCATAGAAATAGCTGAGGAGTATTAA
CTCCTCAAATAAAATTGACCAACATACTCAAACTAAATTAGACCAGTAAG
TAATAAATTTAGATTGGTATAAAGAGTTAGATGATAGCATCAATCAGAAG
CCCCAAGCAAATCCATATCATAGCATCTTCTCTGGGCAAGCCTTTGCTTA
AATTTCTTTGCATCTTGCCAACTATTCTCTATCCATTCTATACTATTCAC
CTTATTTGGTTGATTCTTAACCTAATTTTTGTGGCCACTTATTACTTAAA
TTAGTACCTAAATGGTGTATTGTTCGCCCCTTTTTTTGACCTTTTGCTTT
TTTTTCTTTTTATGAAATTCACCATTGTTATACGTATTATTTGCTTTTGT
ATACTACTAATTTCCTTTTCTCTCTTTCTTTGTTTAACAATTTTTTTAAT
ATTATCTTCCTTC

AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAGGCAAGTCAGAGGGGAAATAATAA
TAATCCAAGACAAAAACACTTTCTCAGACTCCAAGCACAAAAGTGGGTGG
GAAGAGGAGCGAAAGTGCAGGCTGATGTTATTCTAATACTTGAGGTCATG
AGACTTGTAATCAGTCAGGGCCAGACTTGATATTGAGTTCAGTCTTCACC
TTCACACTGGGTTTATTTTAATAATTTAAAGTGACAAGATGTTAAAACTG
CATTAAGATGTTAAAACTGCTTTTTTAACCTTTAAGCCATTACTCCTTCA
CTCCTTAGCCCAAATTGAAATTTCACGTAAAATTTGAGGCGCTTCTATAA
AGAATTACTTGCACACTAATGGAAGAGAAGCTTGTCTATTACATATGAAA
AGATCCTCAACTTCACCTGTCCTGTTCTTAATTTTGTAGATGAGGAAAAA
GAGACAGGCTGAACAAATTACCCAAGTTTACAAGATTAAGTCCGAGCTAT
TTCTGGTTGTCAGGAGAGCCTACTTACAGTTCATATCTCTTTGTCCTTAA
AAGACCTCTGTATTGGGGCCTCATAAGAGTTTATGTTACAAATTCTGATT
ATAACAATTTGTTCAATAATTAATACTCAGTTCGCGCTTCTTCTCTTTTG
GCCTTAATGCAATGGTCCCTTATTTTTCTCCTAATTGGTCAGGTCTTTCT
TCTTTTGG

Query= MSMg01no406_c05.b1 MSMg01no406_c05.b1 CHROMAT_FILE:
MSMg01no406_c05.b1 PHD_FILE: MSMg01no406_c05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:20 2005
         (245 letters)



>mm_chr8_51503309_51503953
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atactcatgattatatgtttaacttccttcttcaagtggggagacagtttgtgatctcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atactcatgattatatgtttaacttccttcttcaagtggggagacagtttgtgatctcat 260

                                                                       
Query: 61  gttttcttcagggataacagaggaaacataaacttaactctccaaaccaggagactttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttttcttcagggataacagaggaaacataaacttaactctccaaaccaggagactttta 320

                                                                       
Query: 121 agatataacaaaagaaataaggatagaggatgtcaaaacaaagtgttccaggattggtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agatataacaaaagaaataaggatagaggatgtcaaaacaaagtgttccaggattggtct 380

                                                                       
Query: 181 gtttgagagtaccggtgcattttcttaactaccggatggagataacttataatttacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgagagtaccggtgcattttcttaactaccggatggagataacttataatttacatt 440

            
Query: 241 t 241
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no406_c05.g1 MSMg01no406_c05.g1 CHROMAT_FILE:
MSMg01no406_c05.g1 PHD_FILE: MSMg01no406_c05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:21 2005
         (434 letters)



>mm_chr8_51656044_51656877
          Length = 834

 Score =  739 bits (382), Expect = 0.0
 Identities = 421/434 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggcaagtcagaggggaaataataataatccaagacaaaaacactttctcagactcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 agaggcaagtcagaggggaaataataataatccaagacaaaaacactttctcagactcca 575

                                                                       
Query: 61  agcacaaaagtgggtgggaagaggagcgaaagtgcaggctgatgttattctaatacttga 120
           |||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||
Sbjct: 574 agcacaaaagtgggtgggaagaggagcgaaagtgcaggctgatgctgttctcatacttga 515

                                                                       
Query: 121 ggtcatgagacttgtaatcagtcagggccagacttgatattgagttcagtcttcaccttc 180
           ||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct: 514 ggtcatgagacttataatcagtcagggctagacttgatattgagttcagtcttcatcttc 455

                                                                       
Query: 181 acactgggtttattttaataatttaaagtgacaagatgttaaaactgcattaagatgtta 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 acactaggtttattttaataatttaaagtgacaagatgttaaaactgcattaagatgtta 395

                                                                       
Query: 241 aaactgcttttttaacctttaagccattactccttcactccttagcccaaattgaaattt 300
           ||||||| ||   ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aaactgcattaagaacctttgagccattactccttcactccttagcccaaattgaaattt 335

                                                                       
Query: 301 cacgtaaaatttgaggcgcttctataaagaattacttgcacactaatggaagagaagctt 360
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 334 cacgtaaaatttgaggcgcttctaaaaagaattacttgcacactaatggaagagaagctt 275

                                                                       
Query: 361 gtctattacatatgaaaagatcctcaacttcacctgtcctgttcttaattttgtagatga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 gtctattacatatgaaaagatcctcaacttcacctgtcctgttcttaattttgtagatga 215

                         
Query: 421 ggaaaaagagacag 434
           ||||||||||||||
Sbjct: 214 ggaaaaagagacag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 434
Length of database: 834
Length adjustment: 9
Effective length of query: 425
Effective length of database: 825
Effective search space:   350625
Effective search space used:   350625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)